JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDIA3_chr15_43741438_43778278	0/0	a0005	505	1	0	0	1	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA4_chr7_148998062_149033505	1/1	a0001	645	322	91	57	129	12	31	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0002	645	12	2	0	10	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0003	645	4	0	0	4	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0004	645	3	3	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0005	645	2	0	2	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0006	645	2	0	0	0	0	2	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0007	645	1	0	0	0	0	1	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0008	645	1	0	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0009	645	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0010	645	1	0	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0011	645	1	0	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0012	645	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	a0013	645	1	0	0	1	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA5_chr3_123062025_123167104	1/1	a0001	519	314	74	66	117	14	41	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0002	519	7	6	1	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0003	519	2	0	0	2	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0004	519	2	0	0	2	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0005	519	2	2	0	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0006	519	1	0	0	0	0	1	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0007	519	1	0	0	1	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0008	519	1	0	1	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0009	519	1	0	0	1	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	a0010	519	1	0	0	1	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA6_chr2_10778391_10817785	1/1	a0001	440	255	85	52	81	10	25	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	a0002	440	83	7	19	43	2	12	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	a0003	440	2	1	1	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	a0004	440	1	0	0	0	0	1	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	a0005	440	1	1	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIK1L_chr1_26106824_26130555	1/1	a0001	341	349	96	64	135	16	36	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	a0002	341	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDILT_chr16_20354175_20409737	1/1	a0001	584	175	22	26	111	3	11	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0002	584	109	28	35	27	5	14	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0003	584	67	21	18	11	7	10	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0004	584	16	9	3	3	0	1	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0005	584	13	0	0	9	0	4	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0006	584	4	4	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0007	584	3	0	0	3	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0008	584	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0009	584	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0010	584	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0011	584	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0012	584	1	0	0	0	0	1	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0013	584	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0014	584	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0015	584	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0016	584	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0017	584	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0018	584	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0019	584	1	0	0	0	0	1	copy fasta	PDILT	chr16	20354175	20409737