JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARL9_chr4_56500791_56529453	0/0	a0015	265	1	0	1	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARMC10_chr7_103070140_103104759	1/1	a0001	343	334	78	71	140	10	33	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0002	343	37	1	2	25	2	7	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0003	343	6	5	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0004	343	4	3	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0005	343	2	2	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0006	343	2	2	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0007	343	1	0	0	1	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0008	343	1	0	0	1	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0009	343	1	0	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0010	343	1	1	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	a0011	343	1	0	0	1	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC12_chr6_35732032_35754079	1/1	a0001	340	433	96	78	193	16	48	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	a0002	340	1	0	1	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	a0003	345	1	0	0	1	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	a0004	340	1	1	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	a0005	340	1	0	1	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	a0006	340	1	1	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC1_chr8_65597458_65639177	1/1	a0001	282	388	90	74	160	18	44	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	a0002	282	1	0	0	1	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	a0003	282	1	0	0	1	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC2_chr6_108843422_108979476	1/1	a0001	867	255	68	53	85	14	33	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	a0002	867	24	1	5	17	0	1	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	a0003	867	8	8	0	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	a0004	867	3	1	2	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC3_chr10_22923053_23043523	1/1	a0001	872	222	44	45	99	5	27	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0002	872	55	28	7	16	0	4	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0003	872	8	8	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0004	872	5	0	0	5	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0005	872	3	3	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0006	872	2	0	0	2	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0007	872	2	0	0	0	1	1	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0008	872	2	2	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0009	872	2	0	2	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	a0010	872	1	1	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC5_chr16_31454501_31472165	1/1	a0001	935	386	89	56	185	13	41	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0002	935	8	0	2	0	3	3	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0003	935	8	0	2	0	2	4	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0004	935	4	4	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0005	935	3	3	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0006	935	2	0	2	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0007	935	2	0	0	2	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0008	935	1	1	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0009	935	1	0	0	1	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0010	935	1	0	0	0	0	1	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0011	935	1	1	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	a0012	935	1	0	0	0	0	1	copy fasta	ARMC5	chr16	31454501	31472165
ARMC6_chr19_19028603_19063176	1/1	a0001	501	316	90	51	126	12	35	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	a0002	501	2	0	0	0	2	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	a0003	501	1	0	1	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176