JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDLIM5_chr4_94446942_94673223	0/0	a0009	596	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0010	596	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0011	596	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM7_chr5_177478394_177502604	1/1	a0001	457	340	78	73	129	18	40	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0002	457	89	15	9	59	0	6	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0003	457	4	3	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0004	457	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0005	457	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0006	457	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0007	457	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0008	457	1	0	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0009	453	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	a0010	457	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDP1_chr8_93911923_93931068	1/1	a0001	537	390	96	68	172	16	36	copy fasta	PDP1	chr8	93911923	93931068
PDP2_chr16_66875515_66896101	1/1	a0001	529	353	92	64	138	16	41	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	a0002	529	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	a0003	529	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	a0004	529	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDPK1_chr16_2533021_2608188	1/1	a0001	556	183	76	39	46	8	12	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	a0002	556	1	0	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPN_chr1_13578832_13622957	0/1	a0001	162	438	92	66	213	17	49	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	1/0	a0002	162	5	0	2	0	1	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	a0003	162	2	2	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	a0004	162	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPR_chr16_70109332_70167537	1/0	a0001	879	151	38	21	65	5	21	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0002	879	91	18	19	47	2	5	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0003	879	27	0	8	18	1	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0004	879	9	9	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0005	879	2	1	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0006	879	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0007	879	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0008	879	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0009	879	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0010	879	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0011	879	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0012	879	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0013	879	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	a0014	879	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDRG1_chr20_31939337_31957046	1/1	a0001	133	343	98	70	113	14	46	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	a0002	133	1	0	0	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDS5A_chr4_39817863_39982911	1/1	a0001	1337	350	76	62	158	12	40	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	a0002	1337	3	1	2	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	a0003	1337	2	2	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	a0004	1337	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5B_chr13_32581452_32783019	1/1	a0001	1447	326	88	49	139	10	38	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	a0002	1447	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	a0003	1447	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	a0004	1447	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	a0005	1447	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	a0006	1447	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019