JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDS5B_chr13_32581452_32783019	0/0	a0007	1447	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	a0008	1447	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	a0009	1447	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDSS1_chr10_26692701_26751798	1/1	a0001	415	400	86	77	174	18	43	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	a0002	415	11	10	1	0	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	a0003	415	3	0	0	3	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	a0004	415	1	0	0	0	0	1	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	a0005	424	1	0	0	1	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS2_chr6_107147562_107464564	1/1	a0001	399	251	88	42	85	6	28	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	a0002	399	8	0	0	8	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	a0003	399	1	0	0	1	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDX1_chr13_27915000_27931313	1/1	a0001	283	419	80	75	202	14	46	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	a0002	284	9	8	1	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	a0003	283	3	0	2	0	0	1	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	a0004	283	2	2	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	a0005	283	1	0	0	0	0	1	copy fasta	PDX1	chr13	27915000	27931313
PDXDC1_chr16_14970026_15043332	0/1	a0001	788	158	44	22	68	4	19	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0002	788	107	6	21	63	2	15	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0003	788	4	4	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0004	788	2	0	0	2	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0005	788	2	0	0	1	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0006	788	2	0	0	1	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0007	788	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0008	788	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0009	788	1	0	1	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	a0010	786	1	0	0	1	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXK_chr21_43714129_43767299	1/1	a0001	312	355	92	77	134	14	36	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	a0002	312	2	2	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	a0003	312	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXP_chr22_37653723_37671932	1/1	a0001	296	416	95	74	188	16	41	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	a0002	296	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	a0003	296	1	0	0	0	0	1	copy fasta	PDXP	chr22	37653723	37671932
PDYN_chr20_1973759_1999058	1/1	a0001	254	383	90	73	166	12	40	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	a0002	254	3	3	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	a0003	254	1	0	0	1	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	a0004	254	1	1	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	a0005	254	1	0	0	1	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	a0006	254	1	0	1	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDZD11_chrX_70281595_70294927	1/1	a0001	140	308	74	52	137	13	30	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	a0002	140	1	0	1	0	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	a0003	18	1	0	0	1	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD2_chr5_31634131_32115932	1/1	a0001	2839	90	32	23	20	3	10	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0002	2839	50	6	8	22	1	13	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0003	2839	23	1	1	18	0	3	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0004	2839	10	9	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0005	2839	5	5	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0006	2839	4	2	1	0	1	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0007	2839	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0008	2839	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0009	2839	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932