JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDZD2_chr5_31634131_32115932	0/0	a0010	2839	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0011	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0012	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0013	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0014	2839	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0015	2839	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0016	2839	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0017	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0018	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0019	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0020	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0021	2839	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0022	2839	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0023	2839	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0024	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0025	2839	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0026	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0027	2839	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0028	2839	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0029	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0030	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0031	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0032	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0033	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0034	2839	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0035	2839	1	0	0	0	1	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	a0036	2839	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD4_chrX_153797166_153835544	1/0	a0001	775	256	73	48	95	9	30	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0002	540	9	3	1	4	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0003	623	4	2	0	2	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0004	103	4	0	0	3	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0005	775	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0006	775	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0007	623	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/1	a0008	775	1	0	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0009	775	1	0	1	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0010	289	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0011	149	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	a0012	149	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD7_chr10_101002679_101036129	0/0	a0001	1033	192	47	27	97	5	16	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	1/1	a0002	1033	121	21	19	64	3	12	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0003	1035	62	8	30	7	6	11	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0004	1033	13	12	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0005	1033	9	1	4	0	2	2	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0006	1033	7	0	0	7	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0007	1035	6	0	1	0	2	3	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0008	1035	5	0	2	0	0	3	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0009	1035	3	0	3	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0010	1033	3	0	0	3	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0011	1035	1	0	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129