JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDZD7_chr10_101002679_101036129	0/0	a0012	1033	1	0	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0013	1033	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0014	452	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0015	1033	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0016	1035	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0017	1054	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0018	1033	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0019	1025	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0020	1033	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	a0021	1033	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD8_chr10_117272274_117380440	1/1	a0001	1154	295	84	50	129	7	23	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0002	1154	12	1	3	6	1	1	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0003	1154	4	4	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0004	1154	3	0	1	0	0	2	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0005	1154	2	2	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0006	1154	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0007	1154	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0008	1154	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0009	1154	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0010	1154	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	a0011	1154	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD9_chr16_21978865_22006116	1/1	a0001	264	363	88	49	178	10	36	copy fasta	PDZD9	chr16	21978865	22006116
PDZD9_chr16_21978865_22006116	0/0	a0002	264	2	0	0	0	2	0	copy fasta	PDZD9	chr16	21978865	22006116
PDZD9_chr16_21978865_22006116	0/0	a0003	264	1	0	1	0	0	0	copy fasta	PDZD9	chr16	21978865	22006116
PDZK1IP1_chr1_47178582_47195036	1/1	a0001	114	416	90	82	180	16	46	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	a0002	114	9	0	0	9	0	0	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	a0003	114	1	0	0	1	0	0	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1_chr1_145665985_145712368	1/0	a0001	519	303	68	55	128	14	37	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	a0002	519	11	11	0	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/1	a0003	519	5	2	0	1	0	1	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	a0004	519	1	1	0	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	a0005	519	1	0	0	1	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	a0006	519	1	0	1	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZRN3_chr3_73377431_73629941	1/1	a0001	1066	163	82	26	32	3	18	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	a0002	1066	45	3	16	19	3	4	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	a0003	1066	4	0	4	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	a0004	1066	2	2	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	a0005	1066	1	1	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	a0006	1066	1	0	0	1	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN4_chr12_41183320_41579745	0/0	a0001	1036	60	21	8	20	2	9	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0002	1036	50	19	7	16	3	5	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0003	1036	22	6	4	12	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0004	1036	21	5	1	13	1	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0005	1036	12	7	2	2	0	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0006	1036	11	0	0	11	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0007	1036	8	0	1	5	0	2	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0008	1036	5	4	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0009	1036	2	1	1	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0010	1036	2	0	0	2	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0011	1036	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745