JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDZRN4_chr12_41183320_41579745	0/0	a0012	1036	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0013	1036	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0014	1036	1	0	1	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0015	1036	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0016	1036	1	0	0	0	0	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0017	1036	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0018	1036	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0019	1036	1	0	0	0	0	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0020	1036	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0021	1036	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0022	1036	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	a0023	1036	1	0	1	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PEA15_chr1_160200384_160220372	1/1	a0001	130	371	90	76	155	12	36	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	a0002	90	1	0	0	1	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEAK1_chr15_77103158_77425104	1/0	a0001	1746	145	41	31	56	5	11	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/1	a0002	1746	86	9	23	41	2	10	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0003	1746	65	8	15	30	3	9	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0004	1746	7	0	0	6	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0005	1746	5	0	0	5	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0006	1746	5	5	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0007	1746	3	3	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0008	1746	2	2	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0009	1746	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0010	1746	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0011	1746	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0012	1746	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0013	1746	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0014	1746	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0015	1746	1	0	0	0	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	a0016	1746	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK3_chr19_2269631_2287175	0/0	a0000	0	14	4	1	6	0	3	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	1/1	a0001	473	233	54	57	80	14	26	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0002	473	106	7	16	66	1	16	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0003	473	86	20	10	51	1	4	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0004	473	7	7	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0005	473	2	0	0	2	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0006	372	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0007	425	1	0	0	0	0	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0008	473	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0009	473	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0010	473	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	a0011	473	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAR1_chr1_156888718_156921429	0/0	a0001	1037	96	12	10	68	1	5	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0002	1037	95	8	18	54	6	9	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/1	a0003	1037	89	31	13	25	6	13	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0004	1037	56	17	13	13	1	12	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0005	1037	10	10	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0006	1032	6	6	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0007	1037	5	0	3	0	0	2	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0008	1032	3	3	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429