JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PEAR1_chr1_156888718_156921429	0/0	a0009	1037	3	0	0	0	0	3	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	1/0	a0010	1037	3	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0011	1037	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0012	1037	2	0	1	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0013	1037	2	0	0	2	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0014	1037	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0015	1037	2	0	0	2	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0016	1037	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0017	1037	1	0	0	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0018	703	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0019	1037	1	0	0	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0020	1037	1	0	0	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0021	1037	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	a0022	1037	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEBP1_chr12_118131124_118150584	1/1	a0001	187	425	92	70	208	16	37	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	a0002	187	1	0	0	0	0	1	copy fasta	PEBP1	chr12	118131124	118150584
PEBP4_chr8_22708251_22932914	1/0	a0001	227	107	8	21	50	11	16	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/1	a0002	227	64	27	11	19	1	5	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0003	223	31	16	9	2	3	1	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0004	223	28	0	5	18	3	2	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0005	227	12	11	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0006	223	10	8	2	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0007	227	7	5	2	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0008	223	4	0	2	2	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0009	227	3	0	0	3	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0010	227	2	0	0	0	0	2	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0011	223	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0012	223	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0013	227	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0014	227	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0015	227	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0016	227	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0017	223	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0018	227	1	0	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0019	227	1	0	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	a0020	223	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PECAM1_chr17_64314415_64395860	0/0	a0001	738	124	32	31	36	4	21	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/1	a0002	738	101	13	25	40	5	17	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	1/0	a0003	738	52	41	7	2	1	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	a0004	738	5	4	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	a0005	738	2	2	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	a0006	738	2	0	0	2	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	a0007	738	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	a0008	738	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECR_chr2_216033388_216086809	1/1	a0001	303	297	71	64	121	15	24	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0002	303	86	20	10	43	0	13	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0003	303	3	0	1	1	0	1	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0004	303	2	2	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0005	303	2	2	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0006	303	2	2	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809