JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PELI3_chr11_66461905_66482337	0/0	a0002	469	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	a0003	237	1	0	0	1	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	a0004	469	1	0	1	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELO_chr5_52782916_52809044	0/1	a0001	385	382	80	63	180	17	41	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	1/0	a0002	385	54	13	6	29	1	4	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	a0003	385	1	0	1	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	a0004	385	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	a0005	385	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	a0006	385	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	a0007	385	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	a0008	385	1	0	0	0	0	1	copy fasta	PELO	chr5	52782916	52809044
PELP1_chr17_4664774_4709137	1/1	a0001	1130	271	81	50	101	5	32	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0002	1130	15	1	5	1	3	5	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0003	1126	9	0	0	9	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0004	1129	5	5	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0005	1130	3	0	0	3	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0006	1130	3	3	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0007	1130	2	0	0	0	0	2	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0008	1130	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0009	1130	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0010	1130	1	0	0	0	0	1	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0011	1130	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0012	1130	1	0	0	1	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0013	1130	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0014	1130	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	a0015	1130	1	0	0	1	0	0	copy fasta	PELP1	chr17	4664774	4709137
PEMT_chr17_17500563_17596708	1/0	a0001	236	194	57	23	93	2	18	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/1	a0002	236	73	18	22	16	6	10	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0003	236	59	6	22	18	7	6	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0004	236	10	4	1	1	1	3	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0005	236	7	7	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0006	236	1	1	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0007	236	1	0	1	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0008	236	1	0	0	0	0	1	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0009	236	1	0	1	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	a0010	236	1	1	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PENK_chr8_56435957_56451641	1/1	a0001	267	416	84	73	204	12	41	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0002	267	5	5	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0003	260	5	3	1	1	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0004	267	3	0	0	0	0	3	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0005	267	2	1	1	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0006	267	1	0	1	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0007	267	1	1	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0008	267	1	1	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0009	267	1	1	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	a0010	267	1	0	0	1	0	0	copy fasta	PENK	chr8	56435957	56451641
PEPD_chr19_33381950_33526791	1/1	a0001	493	211	43	47	86	10	23	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	a0002	493	76	29	15	23	5	4	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	a0003	493	13	0	0	12	0	1	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	a0004	493	6	6	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791