JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PEPD_chr19_33381950_33526791	0/0	a0005	493	3	0	0	3	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	a0006	493	2	2	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	a0007	493	2	1	0	0	1	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	a0008	493	1	1	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PER1_chr17_8135472_8157404	0/1	a0001	1290	288	69	63	106	12	37	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	1/0	a0002	1290	120	22	15	79	0	3	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0003	1290	3	0	1	2	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0004	1290	2	0	2	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0005	1290	2	0	2	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0006	1290	1	0	1	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0007	453	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0008	1290	1	0	0	0	0	1	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0009	1290	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0010	1290	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0011	1290	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0012	1290	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0013	1290	1	0	0	0	0	1	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0014	1290	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0015	1290	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	a0016	1290	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER2_chr2_238239044_238293610	1/1	a0001	1255	267	70	43	111	11	30	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0002	1255	62	1	15	35	3	8	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0003	1255	10	8	2	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0004	1255	7	0	0	3	0	4	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0005	1255	6	6	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0006	1255	3	0	2	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0007	1255	2	0	0	0	0	2	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0008	1255	2	0	0	2	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0009	1255	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0010	1255	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0011	1255	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0012	1255	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0013	1255	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0014	1255	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0015	1255	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0016	1255	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0017	1255	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0018	1255	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	a0019	1255	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER3_chr1_7779291_7850177	0/0	a0001	1192	222	44	30	129	5	14	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0002	1210	96	34	14	32	4	12	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0003	1192	32	4	13	7	3	5	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0004	1192	31	0	9	18	0	4	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	1/1	a0005	1210	8	2	2	0	2	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0006	1192	4	0	3	0	0	1	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0007	1192	4	3	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0008	1192	2	0	0	2	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0009	1210	2	1	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0010	1192	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0011	1192	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177