JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARMC6_chr19_19028603_19063176	0/0	a0004	501	1	0	0	1	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	a0005	501	1	0	0	1	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	a0006	501	1	0	0	0	0	1	copy fasta	ARMC6	chr19	19028603	19063176
ARMC7_chr17_75104969_75135272	1/1	a0001	198	394	88	78	163	16	47	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	a0002	198	6	6	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	a0003	198	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	a0004	198	1	0	0	0	0	1	copy fasta	ARMC7	chr17	75104969	75135272
ARMC8_chr3_138182301_138303373	1/1	a0001	673	245	86	49	68	10	30	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	a0002	673	1	0	1	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC9_chr2_231193631_231381848	0/1	a0001	818	192	3	40	105	10	33	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	a0002	818	2	0	0	2	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	a0003	818	2	0	0	2	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	a0004	818	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	a0005	818	1	0	0	0	0	1	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	a0006	818	1	1	0	0	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	1/0	a0007	818	1	0	0	0	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMCX1_chrX_101545547_101559700	1/1	a0001	453	298	76	47	128	13	32	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	a0002	453	1	0	1	0	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	a0003	114	1	0	0	1	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	a0004	453	1	0	1	0	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	a0005	51	1	0	0	1	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX2_chrX_101650281_101664850	1/1	a0001	632	331	78	57	149	13	32	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	a0002	632	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	a0003	632	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	a0004	638	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	a0005	626	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX3_chrX_101618151_101632843	1/1	a0001	379	297	72	51	135	13	24	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	a0002	379	2	2	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX4_chrX_101480456_101500807	0/1	a0001	2432	114	12	20	59	6	16	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0002	2428	77	1	15	52	1	8	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0003	2430	20	9	3	4	0	4	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0004	2422	13	13	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0005	2422	8	8	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0006	2422	7	5	2	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0007	2422	7	0	0	6	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0008	2428	7	7	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0009	2432	5	0	5	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0010	2428	5	4	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0011	2422	3	3	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0012	2428	3	0	0	3	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0013	2426	2	1	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0014	2422	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0015	2422	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0016	2432	2	0	2	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0017	2432	2	0	0	2	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0018	2428	2	0	0	2	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0019	2422	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0020	2422	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0021	1285	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0022	1601	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807