JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PER3_chr1_7779291_7850177	0/0	a0012	1210	1	0	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0013	1192	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0014	1192	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0015	1192	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0016	1210	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0017	1210	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	a0018	1210	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PERCC1_chr16_1426078_1439441	1/1	a0001	267	196	81	46	34	6	27	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0002	266	141	9	32	79	6	15	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0003	263	16	0	2	9	0	5	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0004	265	7	1	0	0	4	2	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0005	268	5	4	0	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0006	266	3	0	0	3	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0007	267	2	2	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0008	262	2	0	0	2	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0009	271	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0010	267	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0011	134	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0012	266	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0013	266	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	a0014	266	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERM1_chr1_970198_987093	0/1	a0001	790	211	22	44	113	6	25	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0002	790	85	45	18	12	2	8	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0003	790	49	11	11	14	5	8	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0004	790	22	6	2	14	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	1/0	a0005	790	11	7	1	0	1	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0006	790	6	1	2	0	2	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0007	790	4	0	0	4	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0008	790	3	0	0	3	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0009	790	2	0	0	2	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0010	790	2	2	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0011	790	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0012	790	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0013	790	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0014	790	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0015	790	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0016	790	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0017	790	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0018	790	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0019	790	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0020	790	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0021	790	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0022	790	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	a0023	790	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERP_chr6_138083505_138112419	0/0	a0001	193	266	59	43	117	10	37	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	1/1	a0002	193	155	33	39	68	6	7	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	a0003	193	5	0	0	5	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	a0004	193	2	2	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	a0005	193	2	2	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PES1_chr22_30571625_30596910	1/1	a0001	588	332	62	70	140	17	41	copy fasta	PES1	chr22	30571625	30596910