JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PES1_chr22_30571625_30596910	0/0	a0002	588	75	10	9	53	1	2	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0003	588	11	7	3	0	0	1	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0004	588	3	3	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0005	588	2	0	2	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0006	588	2	2	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0007	588	1	0	0	1	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0008	588	1	0	0	1	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0009	588	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0010	588	1	0	0	1	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0011	588	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0012	588	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	a0013	588	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PET100_chr19_7624793_7636956	1/1	a0001	73	378	97	79	143	16	41	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	a0002	73	22	0	1	21	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	a0003	73	1	1	0	0	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	a0004	73	1	0	0	0	0	1	copy fasta	PET100	chr19	7624793	7636956
PET117_chr20_18132863_18148169	1/1	a0001	81	417	96	80	175	18	46	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	a0002	81	5	0	0	5	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	a0003	81	1	0	0	1	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	a0004	81	1	0	0	1	0	0	copy fasta	PET117	chr20	18132863	18148169
PEX10_chr1_2398974_2417564	1/1	a0001	326	346	84	68	135	18	39	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	a0002	326	5	0	0	0	0	5	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	a0003	326	2	1	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	a0004	326	1	0	0	0	0	1	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	a0005	326	1	0	0	0	0	1	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	a0006	326	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	a0007	326	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	a0008	326	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX11A_chr15_89676535_89695754	1/1	a0001	247	430	94	78	188	18	50	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	a0002	247	1	0	0	1	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	a0003	247	1	0	0	1	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11B_chr1_145906350_145923717	1/1	a0001	259	368	94	68	156	6	42	copy fasta	PEX11B	chr1	145906350	145923717
PEX11G_chr19_7471875_7494035	0/0	a0001	241	224	72	25	102	4	21	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	1/1	a0002	241	180	14	44	82	14	24	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	a0003	241	5	1	3	0	0	1	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	a0004	213	5	5	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	a0005	241	1	1	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	a0006	241	1	1	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX12_chr17_35569795_35583571	1/1	a0001	359	431	92	77	208	14	38	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	a0002	359	2	2	0	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	a0003	359	2	0	0	2	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	a0004	359	1	0	1	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX13_chr2_61012720_61056990	1/1	a0001	403	346	85	75	150	12	22	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	a0002	403	4	4	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	a0003	403	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	a0004	403	1	0	0	0	1	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	a0005	403	1	0	0	0	1	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	a0006	403	1	0	1	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX14_chr1_10469950_10635758	1/1	a0001	377	243	71	46	89	10	25	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	a0002	377	9	8	1	0	0	0	copy fasta	PEX14	chr1	10469950	10635758