JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PEX14_chr1_10469950_10635758	0/0	a0003	377	2	2	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	a0004	377	2	0	1	0	0	1	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	a0005	377	1	0	0	1	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	a0006	377	1	1	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX16_chr11_45904663_45922877	0/1	a0001	336	354	94	72	130	14	43	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	a0002	336	8	0	4	0	2	2	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	a0003	336	5	0	4	0	0	1	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	a0004	336	1	0	0	1	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	a0005	336	1	0	0	1	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	1/0	a0006	336	1	0	0	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX19_chr1_160271807_160290133	1/1	a0001	299	375	92	65	170	14	32	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	a0002	50	1	0	0	1	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	a0003	299	1	0	1	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	a0004	299	1	0	0	1	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX1_chr7_92482025_92533520	1/1	a0001	1283	289	61	43	140	11	32	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0002	1283	4	4	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0003	1283	4	0	0	0	0	4	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0004	1283	2	2	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0005	1283	2	0	1	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0006	1283	1	0	0	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0007	1283	1	0	0	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0008	1283	1	0	0	0	1	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0009	1283	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0010	1283	1	0	0	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0011	1283	1	0	0	0	0	1	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0012	1283	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0013	1283	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	a0014	1283	1	0	0	0	0	1	copy fasta	PEX1	chr7	92482025	92533520
PEX26_chr22_18072990_18110396	1/1	a0001	305	391	88	69	178	12	42	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	a0002	305	6	4	2	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	a0003	305	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX2_chr8_76975258_77005078	0/1	a0001	305	401	89	72	185	14	40	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	a0002	305	6	6	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	a0003	305	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	a0004	305	1	0	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	1/0	a0005	305	1	0	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	a0006	305	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	a0007	305	1	0	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX3_chr6_143445805_143495616	1/1	a0001	373	403	90	66	186	16	43	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	a0002	373	9	0	6	2	0	1	copy fasta	PEX3	chr6	143445805	143495616
PEX5L_chr3_179789958_180041937	1/1	a0001	626	213	83	42	48	6	32	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	a0002	626	7	5	2	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5_chr12_7184686_7216459	0/0	a0001	635	379	80	64	183	15	37	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	1/0	a0002	639	36	14	4	10	1	6	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	a0003	635	4	4	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	a0004	654	3	0	0	2	0	1	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	a0005	639	2	2	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	a0006	635	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/1	a0007	635	1	0	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	a0008	635	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459