JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PEX5_chr12_7184686_7216459	0/0	a0009	635	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX6_chr6_42958865_42984181	1/0	a0001	980	215	35	48	109	5	17	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0002	980	99	37	20	23	3	16	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/1	a0003	980	33	8	2	16	1	5	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0004	980	6	6	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0005	980	4	4	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0006	980	3	0	0	3	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0007	980	3	3	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0008	980	2	0	0	2	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0009	980	2	2	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0010	980	2	0	2	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0011	980	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0012	980	1	0	0	0	1	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0013	980	1	0	1	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0014	980	1	0	0	1	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0015	980	1	0	1	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0016	980	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0017	980	1	0	0	1	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0018	980	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	a0019	208	1	0	0	1	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX7_chr6_136817592_136918934	1/1	a0001	323	329	92	61	132	12	30	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	a0002	323	1	0	1	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PF4V1_chr4_73848296_73859483	1/1	a0001	104	447	96	71	224	16	38	copy fasta	PF4V1	chr4	73848296	73859483
PF4V1_chr4_73848296_73859483	0/0	a0002	104	1	0	1	0	0	0	copy fasta	PF4V1	chr4	73848296	73859483
PF4_chr4_73975811_73987027	1/1	a0001	101	366	94	62	154	12	42	copy fasta	PF4	chr4	73975811	73987027
PFAS_chr17_8244289_8275486	1/0	a0001	1338	116	24	17	66	2	6	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/1	a0002	1338	91	25	20	24	10	11	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0003	1338	83	0	17	57	1	8	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0004	1338	40	20	9	7	2	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0005	1338	13	10	2	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0006	1338	7	2	0	4	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0007	1338	6	5	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0008	1338	5	0	4	0	1	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0009	1338	2	0	2	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0010	1338	2	0	0	0	0	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0011	1338	2	0	1	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0012	1338	2	0	0	0	0	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0013	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0014	1338	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0015	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0016	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0017	1338	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0018	1338	1	1	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0019	1338	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0020	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0021	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0022	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0023	1338	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0024	1338	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0025	1338	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486