JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PFAS_chr17_8244289_8275486	0/0	a0026	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0027	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0028	1338	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0029	1338	1	1	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0030	1338	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	a0031	1338	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFDN1_chr5_140240035_140308101	1/1	a0001	122	330	84	56	142	12	34	copy fasta	PFDN1	chr5	140240035	140308101
PFDN2_chr1_161095561_161123037	1/1	a0001	154	369	72	65	180	18	32	copy fasta	PFDN2	chr1	161095561	161123037
PFDN2_chr1_161095561_161123037	0/0	a0002	154	1	0	1	0	0	0	copy fasta	PFDN2	chr1	161095561	161123037
PFDN4_chr20_54203087_54224961	1/1	a0001	134	436	88	76	208	16	46	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	a0002	134	2	2	0	0	0	0	copy fasta	PFDN4	chr20	54203087	54224961
PFDN5_chr12_53290542_53304450	1/1	a0001	154	382	92	76	170	10	32	copy fasta	PFDN5	chr12	53290542	53304450
PFDN6_chr6_33284601_33295933	0/1	a0001	129	397	98	70	170	18	40	copy fasta	PFDN6	chr6	33284601	33295933
PFDN6_chr6_33284601_33295933	0/0	a0002	129	2	0	2	0	0	0	copy fasta	PFDN6	chr6	33284601	33295933
PFKFB1_chrX_54927961_54999188	1/1	a0001	471	219	68	39	82	8	20	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	a0002	68	1	0	0	1	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	a0003	471	1	0	0	0	1	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	a0004	334	1	0	0	1	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB2_chr1_207048275_207082817	1/1	a0001	505	338	99	66	121	18	32	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	a0002	505	2	1	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	a0003	505	1	0	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	a0004	505	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB3_chr10_6197932_6240532	1/0	a0001	520	427	93	84	187	18	44	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	a0002	520	2	2	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	a0003	520	1	0	0	1	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/1	a0004	520	1	0	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	a0005	103	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB4_chr3_48512684_48561803	1/1	a0001	469	244	74	32	97	14	25	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	a0002	469	1	0	0	0	0	1	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	a0003	469	1	0	0	1	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKL_chr21_44295053_44332373	1/1	a0001	780	364	82	71	155	14	40	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	a0002	780	24	12	7	1	0	4	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	a0003	780	2	0	0	0	0	2	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	a0004	358	1	0	0	1	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	a0005	780	1	0	0	1	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKM_chr12_48114364_48151404	1/1	a0001	780	335	89	62	141	10	31	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	a0002	780	74	9	14	35	4	12	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	a0003	780	2	0	0	2	0	0	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	a0004	780	1	0	0	0	0	1	copy fasta	PFKM	chr12	48114364	48151404
PFKP_chr10_3062548_3141802	1/1	a0001	784	387	88	74	165	16	42	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0002	784	6	0	3	0	0	3	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0003	784	2	0	0	2	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0004	784	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0005	784	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0006	784	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0007	784	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0008	784	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0009	784	1	0	0	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	a0010	784	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFN1_chr17_4940652_4953530	1/1	a0001	140	432	90	84	198	14	44	copy fasta	PFN1	chr17	4940652	4953530