JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PFN2_chr3_149959904_149975895	1/1	a0001	140	434	94	80	196	16	46	copy fasta	PFN2	chr3	149959904	149975895
PFN3_chr5_177395109_177405661	1/1	a0001	137	414	93	74	182	16	47	copy fasta	PFN3	chr5	177395109	177405661
PFN3_chr5_177395109_177405661	0/0	a0002	137	1	1	0	0	0	0	copy fasta	PFN3	chr5	177395109	177405661
PFN3_chr5_177395109_177405661	0/0	a0003	137	1	0	0	0	0	1	copy fasta	PFN3	chr5	177395109	177405661
PFN4_chr2_24109809_24128334	1/1	a0001	129	358	76	66	156	18	40	copy fasta	PFN4	chr2	24109809	24128334
PGA3_chr11_61198515_61218098	0/0	a0000	0	2	1	1	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0001	388	209	43	41	87	7	31	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0002	388	62	28	21	5	2	6	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0003	388	13	11	1	1	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	1/0	a0004	388	12	5	2	2	1	1	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0005	388	7	0	0	7	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0006	388	3	3	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0007	388	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0008	388	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	a0009	388	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA4_chr11_61217347_61236694	0/0	a0000	0	14	5	3	1	1	4	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0001	388	264	71	48	107	7	31	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0002	388	9	0	0	9	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0003	388	5	2	1	0	0	2	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0004	388	3	3	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0005	388	2	0	0	2	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0006	388	1	0	1	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0007	388	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0008	388	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0009	388	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0010	388	1	0	1	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0011	388	1	0	0	1	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	a0012	388	1	0	0	0	0	1	copy fasta	PGA4	chr11	61217347	61236694
PGA5_chr11_61236175_61256444	1/1	a0001	388	392	91	72	172	12	43	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0002	388	2	2	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0003	388	2	2	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0004	388	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0005	388	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0006	388	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0007	388	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0008	388	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0009	388	1	0	1	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0010	388	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0011	388	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0012	388	1	0	1	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	a0013	388	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGAM1_chr10_97421191_97438444	1/1	a0001	254	437	89	76	208	16	46	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	a0002	254	1	1	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM2_chr7_44057727_44070567	1/1	a0001	253	371	83	77	158	14	37	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	a0002	253	22	11	3	5	0	3	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	a0003	253	3	0	0	3	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	a0004	253	2	0	0	0	2	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	a0005	253	2	2	0	0	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM4_chrX_77962949_77974638	1/1	a0001	254	295	54	62	136	9	32	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	a0002	254	14	14	0	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638