JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PGAM4_chrX_77962949_77974638	0/0	a0003	254	4	4	0	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	a0004	254	2	0	0	2	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	a0005	254	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	a0006	254	1	0	1	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	a0007	119	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	a0008	254	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	a0009	254	1	0	1	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM5_chr12_132705842_132727734	1/1	a0001	289	384	88	78	153	16	47	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	a0002	289	8	0	6	0	2	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	a0003	289	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	a0004	289	1	0	0	0	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAP1_chr2_196828004_196931707	1/1	a0001	922	185	76	34	39	6	28	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	a0002	922	2	2	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	a0003	922	1	0	0	1	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP2_chr11_3803560_3831371	1/1	a0001	315	413	96	76	175	18	46	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	a0002	315	2	2	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	a0003	315	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	a0004	248	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	a0005	315	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP3_chr17_39666122_39693057	1/1	a0001	320	368	94	76	146	14	36	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	a0002	320	2	0	0	2	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	a0003	320	1	0	0	1	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	a0004	320	1	1	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	a0005	320	1	1	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	a0006	320	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	a0007	320	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	a0008	135	1	0	0	1	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP4_chr9_101468170_101492173	1/1	a0001	403	448	86	86	217	14	43	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	a0002	403	5	0	0	5	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	a0003	403	5	5	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	a0004	403	1	0	0	0	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	a0005	403	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP6_chr16_365788_386978	1/1	a0001	771	176	42	36	78	4	14	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0002	771	122	36	27	36	6	17	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0003	771	52	7	7	18	4	16	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0004	771	9	5	2	1	1	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0005	129	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0006	771	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0007	771	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0008	771	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0009	771	1	0	0	0	1	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0010	771	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0011	771	1	0	0	0	0	1	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0012	771	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0013	771	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0014	771	1	0	0	0	0	1	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0015	771	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0016	771	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0017	771	1	0	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0018	771	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978