JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PGAP6_chr16_365788_386978	0/0	a0019	771	1	0	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0020	771	1	0	0	0	0	1	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	a0021	771	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGBD1_chr6_28276572_28307549	1/0	a0001	809	126	3	28	67	7	20	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0002	809	81	42	10	26	0	3	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0003	809	80	7	12	57	0	4	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/1	a0004	809	69	32	6	17	5	8	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0005	809	38	5	8	21	1	3	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0006	809	5	0	4	0	1	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0007	809	2	1	1	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0008	809	1	0	0	1	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0009	809	1	0	1	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0010	809	1	1	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0011	809	1	0	0	0	0	1	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0012	676	1	0	0	1	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0013	809	1	1	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	a0014	809	1	0	0	0	0	1	copy fasta	PGBD1	chr6	28276572	28307549
PGBD2_chr1_248901235_248924146	1/1	a0001	592	369	86	65	164	13	39	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	a0002	592	33	0	0	30	0	3	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	a0003	592	14	13	1	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	a0004	592	2	0	0	2	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	a0005	384	1	0	0	0	1	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	a0006	592	1	0	0	1	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	a0007	592	1	1	0	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	a0008	592	1	0	0	1	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD4_chr15_34097083_34113686	1/1	a0001	585	389	87	70	176	12	42	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	a0002	585	10	9	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	a0003	585	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD5_chr1_230309490_230431332	1/1	a0001	524	276	74	51	106	7	36	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	a0002	524	7	0	1	0	1	5	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	a0003	524	2	0	1	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	a0004	524	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	a0005	524	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	a0006	517	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGC_chr6_41731711_41752397	1/1	a0001	388	458	97	84	207	18	50	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	a0002	388	3	2	1	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	a0003	388	1	1	0	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	a0004	388	1	0	0	1	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	a0005	166	1	0	1	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGD_chr1_10394064_10425511	1/1	a0001	483	365	86	61	155	14	47	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	a0002	483	28	6	7	14	0	1	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	a0003	483	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGF_chr14_74936834_74960597	1/1	a0001	170	406	96	74	178	16	40	copy fasta	PGF	chr14	74936834	74960597
PGGHG_chr11_284126_301107	1/1	a0001	737	375	85	75	170	16	27	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0002	737	66	9	3	39	0	15	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0003	737	1	0	0	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0004	737	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0005	737	1	0	0	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0006	737	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0007	737	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107