JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PGLYRP3_chr1_153292116_153317952	0/0	a0003	341	43	5	4	34	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0004	341	7	1	3	0	1	2	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0005	341	3	3	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0006	341	3	3	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0007	341	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0008	341	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0009	341	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0010	341	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0011	341	1	0	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	a0012	341	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP4_chr1_153325120_153353841	0/0	a0001	373	270	63	52	112	13	30	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0002	373	44	3	0	41	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	1/0	a0003	373	37	4	3	19	0	10	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0004	373	19	13	3	0	1	2	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0005	373	4	4	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0006	373	4	0	0	4	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0007	373	3	3	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/1	a0008	373	3	0	2	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0009	373	2	0	0	2	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0010	373	2	2	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0011	373	2	0	0	2	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	a0012	373	2	0	0	0	2	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGM1_chr1_63588411_63665245	1/1	a0001	562	198	37	30	100	2	27	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0002	562	57	2	9	35	5	6	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0003	562	34	5	13	13	2	1	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0004	562	19	4	7	8	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0005	562	19	10	6	0	1	2	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0006	562	12	12	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0007	562	9	7	0	1	0	1	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0008	562	5	5	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0009	562	4	0	0	4	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0010	562	3	3	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0011	562	2	1	1	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0012	562	1	0	0	1	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0013	562	1	0	1	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0014	562	1	0	1	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	a0015	562	1	0	0	0	0	1	copy fasta	PGM1	chr1	63588411	63665245
PGM2L1_chr11_74325316_74403433	0/1	a0001	622	182	63	26	67	6	19	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	1/0	a0002	622	94	19	13	50	3	8	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0003	622	89	8	7	63	3	8	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0004	622	7	1	2	0	0	4	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0005	622	3	0	0	3	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0006	622	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0007	622	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0008	622	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0009	622	1	0	0	0	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	a0010	622	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2_chr4_37821686_37867937	1/1	a0001	612	374	66	55	195	18	38	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0002	612	61	20	11	29	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0003	612	2	0	0	0	0	2	copy fasta	PGM2	chr4	37821686	37867937