JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARMCX4_chrX_101480456_101500807	0/0	a0023	2432	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0024	1903	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0025	2333	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0026	2432	1	0	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0027	2432	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0028	2430	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0029	2436	1	0	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0030	1742	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0031	1575	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0032	2422	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0033	1364	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0034	2434	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0035	2428	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0036	1242	1	0	0	0	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0037	2422	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0038	232	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0039	2432	1	0	0	0	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0040	426	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0041	482	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0042	1269	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0043	2428	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0044	2428	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0045	2428	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0046	1607	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	1/0	a0047	2290	1	0	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0048	2422	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0049	2406	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0050	2428	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0051	2428	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0052	2428	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0053	2428	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0054	2428	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0055	1607	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0056	2428	1	0	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0057	2422	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0058	2422	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0059	2428	1	0	0	0	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0060	410	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	a0061	204	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX5_chrX_102594515_102609159	1/1	a0001	558	310	72	47	142	13	34	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	a0002	558	5	4	0	1	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	a0003	558	1	0	0	1	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX6_chrX_101610125_101623000	1/1	a0001	300	81	36	10	19	5	9	copy fasta	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	a0002	300	12	1	3	6	0	2	copy fasta	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	a0003	300	1	1	0	0	0	0	copy fasta	ARMCX6	chrX	101610125	101623000
ARMH1_chr1_44669714_44730591	1/1	a0001	440	283	81	65	93	10	32	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	a0002	440	2	1	1	0	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	a0003	440	2	0	2	0	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	a0004	440	1	0	0	1	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH2_chr6_24792335_24803917	0/0	a0000	0	5	1	0	1	1	2	copy fasta	ARMH2	chr6	24792335	24803917