JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PGM2_chr4_37821686_37867937	0/0	a0004	612	2	2	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0005	612	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0006	258	1	0	0	1	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0007	612	1	0	0	0	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0008	612	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0009	612	1	0	0	1	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0010	612	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	a0011	612	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM3_chr6_83159873_83198265	1/0	a0001	542	180	40	41	63	8	27	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/1	a0002	542	160	47	19	74	4	15	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	a0003	542	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	a0004	542	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	a0005	542	1	0	0	1	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	a0006	542	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM5_chr9_68351611_68536061	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	1/1	a0001	567	238	70	42	88	12	24	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	a0002	567	2	2	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	a0003	567	2	2	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	a0004	506	2	0	0	2	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	a0005	567	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGPEP1L_chr15_98963229_99012792	0/1	a0000	0	169	12	33	93	5	25	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	1/0	a0001	142	186	79	27	64	3	12	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	a0002	142	34	3	8	10	6	7	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	a0003	142	6	1	2	3	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	a0004	142	2	0	2	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	a0005	142	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1_chr19_18335598_18374950	1/1	a0001	209	411	96	80	169	18	46	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	a0002	209	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGP_chr16_2206593_2219840	1/0	a0001	321	438	96	77	199	16	49	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/1	a0002	321	11	0	8	0	1	1	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	a0003	321	1	0	0	0	1	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	a0004	321	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	a0005	321	1	0	1	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGRMC1_chrX_119231285_119249466	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC1_chrX_119231285_119249466	1/1	a0001	195	261	70	53	94	13	29	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC1_chrX_119231285_119249466	0/0	a0002	195	2	0	0	2	0	0	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC2_chr4_128264242_128292813	1/1	a0001	223	435	94	78	205	18	38	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	a0002	223	1	0	0	1	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGR_chr11_101024624_101134813	1/1	a0001	933	202	54	48	57	13	28	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0002	933	17	1	10	1	3	2	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0003	933	15	14	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0004	933	10	9	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0005	933	3	3	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0006	933	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0007	933	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0008	933	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0009	431	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0010	933	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	a0011	933	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGS1_chr17_78373649_78429659	1/1	a0001	556	389	87	76	164	16	44	copy fasta	PGS1	chr17	78373649	78429659