JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PGS1_chr17_78373649_78429659	0/0	a0002	556	5	5	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	a0003	556	3	0	0	3	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	a0004	556	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PHACTR1_chr6_12711767_13292837	0/0	a0001	580	108	68	26	8	2	4	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR2_chr6_143672965_143836185	1/1	a0001	645	223	58	41	91	7	24	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0002	645	76	29	19	20	5	3	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0003	645	3	3	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0004	645	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0005	645	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0006	645	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0007	645	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0008	645	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0009	645	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0010	645	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	a0011	645	1	0	0	0	0	1	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR3_chr20_59599540_59852711	1/1	a0001	559	243	60	56	83	6	36	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	a0002	559	3	0	0	3	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	a0003	559	2	0	0	2	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	a0004	559	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	a0005	559	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR4_chr1_28364740_28505364	1/1	a0001	702	141	52	36	28	9	14	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	a0002	702	84	27	24	14	7	12	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	a0003	702	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	a0004	702	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	a0005	702	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHAF1_chr16_67104941_67153544	1/1	a0001	422	226	91	29	70	10	24	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	a0002	422	2	0	1	0	0	1	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	a0003	422	1	1	0	0	0	0	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	a0004	422	1	0	0	0	0	1	copy fasta	PHAF1	chr16	67104941	67153544
PHAX_chr5_126595947_126632252	1/1	a0001	394	315	85	55	125	10	38	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	a0002	394	64	0	5	51	4	4	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	a0003	394	2	2	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	a0004	394	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHB1_chr17_49399052_49419882	1/1	a0001	272	442	92	80	208	16	44	copy fasta	PHB1	chr17	49399052	49419882
PHB2_chr12_6960327_6975664	1/1	a0001	299	378	94	70	158	12	42	copy fasta	PHB2	chr12	6960327	6975664
PHC1_chr12_8909509_8946467	0/0	a0001	1004	212	61	34	96	5	16	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0002	1004	130	13	27	76	6	8	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0003	1004	14	3	5	0	0	6	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0004	1002	6	6	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0005	1004	2	0	2	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0006	1004	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0007	1004	1	0	0	0	1	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0008	1004	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	a0009	1004	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC2_chr1_33318626_33436095	1/1	a0001	859	272	57	40	139	6	28	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	a0002	859	60	1	9	32	5	13	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	a0003	859	31	18	4	7	0	2	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	a0004	859	3	0	1	0	1	1	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	a0005	859	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	a0006	859	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095