JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHC2_chr1_33318626_33436095	0/0	a0007	859	1	0	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	a0008	859	1	0	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC3_chr3_170082584_170186733	1/1	a0001	995	319	71	63	147	14	22	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0002	995	3	3	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0003	995	2	1	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0004	995	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0005	995	1	0	0	0	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0006	995	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0007	995	1	0	0	0	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0008	995	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0009	995	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0010	995	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	a0011	995	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHETA1_chr12_111355679_111374095	1/1	a0001	249	234	71	43	78	7	33	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0002	246	128	16	23	75	3	11	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0003	246	8	0	0	8	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0004	246	4	0	0	4	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0005	249	2	2	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0006	249	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0007	249	1	1	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0008	246	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	a0009	246	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA2_chr22_42069248_42084438	1/0	a0001	259	322	79	60	145	9	28	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/1	a0002	259	74	7	16	34	5	11	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	a0003	259	6	4	2	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	a0004	259	2	2	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	a0005	259	1	0	0	0	0	1	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	a0006	259	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHEX_chrX_22027325_22256310	1/1	a0001	749	227	65	37	93	7	23	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	a0002	749	2	0	2	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	a0003	209	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	a0004	749	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHF10_chr6_169698902_169729500	1/1	a0001	498	391	95	65	183	10	36	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	a0002	498	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	a0003	498	1	0	1	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	a0004	259	1	0	0	1	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF11_chr13_49490953_49533976	1/1	a0001	331	405	84	76	187	14	42	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	a0002	324	5	5	0	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	a0003	331	2	2	0	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	a0004	331	1	0	0	1	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	a0005	331	1	1	0	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF12_chr17_28900250_28956518	1/1	a0001	1004	226	75	43	70	8	28	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	a0002	1004	2	0	2	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	a0003	1004	2	2	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	a0004	1004	1	0	1	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	a0005	1004	1	1	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF13_chr1_6608731_6629030	1/1	a0001	300	406	92	80	173	16	43	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	a0002	300	5	4	0	0	0	1	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	a0003	300	1	0	0	1	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF14_chr7_10968872_11174618	1/1	a0001	43	298	92	62	106	8	28	copy fasta	PHF14	chr7	10968872	11174618