JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHKA2_chrX_18887298_18989114	0/0	a0002	1235	3	0	2	0	1	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0003	1235	1	0	1	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0004	1235	1	0	0	0	1	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0005	966	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0006	1235	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0007	1116	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0008	1235	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0009	940	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0010	508	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0011	1235	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0012	1235	1	0	1	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	a0013	1233	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKB_chr16_47456331_47706523	1/1	a0001	1093	67	46	7	3	2	7	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0002	1093	24	19	5	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0003	1093	1	0	1	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0004	1093	1	0	0	1	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0005	1093	1	0	1	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0006	1093	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0007	1093	1	0	0	0	0	1	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0008	1093	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	a0009	1093	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKG1_chr7_56075295_56097952	1/1	a0001	387	413	95	78	185	14	39	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	a0002	387	2	0	0	2	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	a0003	387	1	0	0	1	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	a0004	294	1	0	0	0	0	1	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	a0005	387	1	1	0	0	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG2_chr16_30743425_30766176	1/1	a0001	406	260	81	62	70	11	34	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	a0002	406	2	1	0	1	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	a0003	406	1	0	0	0	1	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	a0004	406	1	0	0	1	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHLDA1_chr12_76020447_76036776	0/1	a0001	400	422	94	79	191	17	40	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0002	400	22	1	0	17	1	3	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0003	400	8	0	0	8	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0004	400	2	0	0	2	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	1/0	a0005	401	2	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0006	400	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0007	400	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0008	400	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0009	401	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0010	400	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	a0011	400	1	0	1	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA2_chr11_2923273_2934420	0/1	a0001	152	375	96	74	142	18	44	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA3_chr1_201459278_201474188	1/1	a0001	127	433	94	76	203	16	42	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	a0002	127	5	1	4	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	a0003	127	2	0	0	2	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	a0004	86	1	1	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	a0005	127	1	0	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDB1_chr11_118602615_118663028	1/1	a0001	1377	318	65	60	144	12	35	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0002	1377	16	15	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0003	1377	4	0	0	3	0	1	copy fasta	PHLDB1	chr11	118602615	118663028