JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHLDB1_chr11_118602615_118663028	0/0	a0004	1377	2	2	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0005	1377	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0006	1377	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0007	1377	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0008	1377	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0009	1377	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0010	1377	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0011	1377	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0012	1377	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0013	1377	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0014	1377	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0015	1377	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0016	1377	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0017	1377	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0018	1377	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0019	1377	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	a0020	1377	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB2_chr3_111854265_111981517	1/1	a0001	1253	213	56	57	60	12	26	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0002	1253	43	7	9	24	0	3	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0003	1253	8	8	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0004	1253	4	4	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0005	1253	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0006	1253	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0007	1253	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0008	1253	2	0	0	2	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0009	1253	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0010	1253	1	0	0	1	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0011	1253	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0012	1253	1	0	0	0	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0013	1253	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0014	1253	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0015	1253	1	0	0	1	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0016	1253	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	a0017	1253	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB3_chr19_43470103_43509746	1/0	a0001	640	327	76	52	141	14	43	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0002	640	41	7	12	20	0	2	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0003	640	3	0	0	3	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0004	640	3	0	0	3	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0005	640	3	0	1	0	0	2	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0006	640	3	3	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/1	a0007	640	2	0	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0008	640	2	2	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0009	640	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0010	646	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0011	640	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0012	640	1	0	0	0	0	1	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0013	640	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0014	640	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0015	640	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0016	640	1	0	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746