JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHLDB3_chr19_43470103_43509746	0/0	a0017	640	1	0	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0018	640	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0019	640	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	a0020	640	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLPP1_chr18_62710541_62985433	1/1	a0001	1717	170	68	28	53	5	14	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0002	1716	7	7	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0003	1717	4	0	3	0	0	1	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0004	1717	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0005	1717	1	0	0	0	0	1	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0006	1717	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0007	1717	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0008	1717	1	0	1	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0009	1717	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0010	1717	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0011	1717	1	0	0	1	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0012	1717	1	0	0	0	1	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0013	1717	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	a0014	1717	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP2_chr16_71639924_71729701	1/1	a0001	1323	244	76	31	96	7	32	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0002	1323	28	3	11	6	3	5	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0003	1323	23	6	13	1	0	3	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0004	1323	14	1	8	5	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0005	1323	4	0	0	4	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0006	1323	2	0	2	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0007	1323	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0008	1323	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0009	1323	1	0	1	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0010	1323	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0011	1323	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0012	1323	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0013	1323	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0014	1323	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	a0015	1323	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHOSPHO1_chr17_49218366_49235787	1/1	a0001	267	419	96	81	180	14	46	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	a0002	267	1	0	1	0	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO2_chr2_169689469_169706708	1/1	a0001	241	433	95	64	214	14	44	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	a0002	241	1	1	0	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	a0003	241	1	0	0	1	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	a0004	241	1	0	0	1	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOX2A_chr11_72234077_72249176	1/1	a0001	284	358	91	63	146	14	42	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	a0002	281	7	7	0	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	a0003	284	1	0	1	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2B_chr4_41739082_41753725	1/1	a0001	314	376	92	70	159	10	43	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	a0002	309	3	0	0	3	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	a0003	307	3	0	0	2	0	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHPT1_chr9_136844409_136856024	1/1	a0001	125	341	79	80	122	16	42	copy fasta	PHPT1	chr9	136844409	136856024
PHPT1_chr9_136844409_136856024	0/0	a0002	125	3	3	0	0	0	0	copy fasta	PHPT1	chr9	136844409	136856024
PHRF1_chr11_571470_617222	0/1	a0001	1649	149	33	32	54	9	20	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0002	1649	63	15	10	32	1	5	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0003	1645	12	7	5	0	0	0	copy fasta	PHRF1	chr11	571470	617222