JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHRF1_chr11_571470_617222	0/0	a0004	1649	10	0	9	0	1	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0005	1649	8	0	2	1	1	4	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0006	1645	6	6	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0007	1649	4	4	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0008	1649	3	3	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0009	1645	3	3	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0010	1649	2	0	2	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0011	1649	2	2	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0012	1649	2	2	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0013	1645	2	2	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0014	1649	2	0	0	2	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0015	1649	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0016	1645	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0017	1649	1	0	0	0	0	1	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0018	1649	1	0	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0019	1649	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0020	1649	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0021	1649	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0022	1649	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0023	1649	1	0	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0024	1649	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	a0025	1649	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHTF1_chr1_113691831_113764486	1/1	a0001	762	327	66	57	148	14	40	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	a0002	762	1	1	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	a0003	513	1	1	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	a0004	762	1	0	1	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF2_chr7_77793773_77962225	1/1	a0001	751	310	87	60	112	12	37	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	a0002	751	2	0	0	0	2	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	a0003	751	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	a0004	751	1	0	0	0	0	1	copy fasta	PHTF2	chr7	77793773	77962225
PHYHD1_chr9_128915982_128947038	1/1	a0001	291	391	89	75	161	18	46	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	a0002	291	5	5	0	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	a0003	291	3	0	0	3	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	a0004	77	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	a0005	291	1	0	1	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	a0006	291	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	a0007	291	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	a0008	291	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHIPL_chr10_59171643_59252770	0/0	a0001	376	110	55	7	34	1	13	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	a0002	376	92	29	15	36	1	11	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIP_chr8_22214703_22237099	1/1	a0001	330	436	96	84	190	16	48	copy fasta	PHYHIP	chr8	22214703	22237099
PHYH_chr10_13272799_13305064	1/1	a0001	338	397	80	68	193	14	40	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	a0002	338	34	10	8	6	4	6	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	a0003	338	3	2	1	0	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	a0004	338	1	0	1	0	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	a0005	338	1	0	0	0	0	1	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	a0006	338	1	0	0	1	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	a0007	338	1	0	0	0	0	1	copy fasta	PHYH	chr10	13272799	13305064
PHYKPL_chr5_178203471_178237802	1/1	a0001	450	393	72	79	176	16	48	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	a0002	450	36	18	1	17	0	0	copy fasta	PHYKPL	chr5	178203471	178237802