JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHYKPL_chr5_178203471_178237802	0/0	a0003	450	6	6	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	a0004	450	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	a0005	450	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	a0006	249	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	a0007	450	1	1	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	a0008	450	1	1	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PI15_chr8_74819534_74860029	1/1	a0001	258	337	87	62	132	16	38	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	a0002	258	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI16_chr6_36949738_36969837	0/0	a0001	463	205	48	43	86	10	18	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	1/1	a0002	463	166	25	20	92	4	23	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	a0003	463	21	19	2	0	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	a0004	463	12	0	0	12	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	a0005	463	12	2	1	6	0	3	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	a0006	463	5	0	0	5	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	a0007	463	4	4	0	0	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	a0008	463	1	0	0	1	0	0	copy fasta	PI16	chr6	36949738	36969837
PI3_chr20_45169902_45181544	1/1	a0001	117	391	84	69	186	12	38	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	a0002	117	31	10	9	6	2	4	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	a0003	117	2	0	0	2	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	a0004	117	1	0	0	1	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	a0005	117	1	0	0	1	0	0	copy fasta	PI3	chr20	45169902	45181544
PI4K2A_chr10_97635671_97681434	1/1	a0001	479	347	91	66	138	14	36	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	a0002	479	3	3	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2B_chr4_25229033_25284204	0/1	a0001	481	209	23	40	118	4	23	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	1/0	a0002	481	159	63	26	53	3	13	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	a0003	481	60	12	13	27	1	7	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	a0004	480	5	0	0	5	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	a0005	481	1	0	1	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	a0006	481	1	0	0	0	0	1	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	a0007	481	1	0	0	1	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4KA_chr22_20702691_20863811	1/1	a0001	2102	310	64	61	136	12	35	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0002	2104	10	10	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0003	2106	7	5	2	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0004	2102	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0005	778	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0006	2102	1	0	0	1	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0007	2102	1	0	0	1	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0008	2102	1	0	0	0	0	1	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0009	2102	1	0	1	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	a0010	2104	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KB_chr1_151286804_151332416	1/1	a0001	816	316	78	60	122	14	40	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	a0002	816	9	0	0	9	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	a0003	816	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	a0004	816	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	a0005	816	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	a0006	816	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	a0007	816	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PIANP_chr12_6688791_6705815	1/1	a0001	276	337	96	82	99	16	42	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	a0002	276	1	0	0	1	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIAS1_chr15_68049315_68198847	1/1	a0001	651	258	90	60	74	12	20	copy fasta	PIAS1	chr15	68049315	68198847