JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARMH2_chr6_24792335_24803917	1/1	a0001	230	403	75	80	194	12	40	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	a0002	230	31	16	3	11	0	1	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	a0003	229	4	0	1	0	1	2	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	a0004	230	1	0	0	0	0	1	copy fasta	ARMH2	chr6	24792335	24803917
ARMH3_chr10_101840599_102061173	1/1	a0001	689	260	59	51	114	14	20	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	a0002	689	1	0	1	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	a0003	689	1	1	0	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH4_chr14_57995761_58157213	1/0	a0001	774	106	26	17	46	3	13	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/1	a0002	774	79	17	17	33	2	9	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0003	774	37	22	5	6	0	4	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0004	774	23	16	4	0	1	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0005	774	8	0	1	5	0	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0006	774	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0007	774	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0008	774	1	0	0	0	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0009	774	1	0	0	0	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	a0010	774	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMS2_chr10_122449653_122462352	1/0	a0001	107	215	65	48	72	10	19	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/1	a0002	107	129	27	19	71	4	7	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	a0003	37	61	4	5	43	4	5	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	a0004	107	19	4	6	0	0	9	copy fasta	ARMS2	chr10	122449653	122462352
ARMT1_chr6_151447466_151475101	1/0	a0001	441	358	80	64	174	11	28	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/1	a0002	441	30	1	9	5	3	11	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0003	441	11	0	0	10	0	1	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0004	441	6	6	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0005	441	5	0	0	5	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0006	441	4	4	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0007	441	1	0	0	0	0	1	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0008	441	1	0	1	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0009	441	1	1	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	a0010	441	1	0	0	0	0	1	copy fasta	ARMT1	chr6	151447466	151475101
ARNT2_chr15_80399382_80602933	1/1	a0001	717	245	74	35	97	9	28	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	a0002	717	21	13	3	0	3	2	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	a0003	717	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	a0004	717	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT_chr1_150804713_150881599	1/1	a0001	789	322	84	53	138	16	29	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	a0002	789	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	a0003	789	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	a0004	789	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	a0005	789	1	0	1	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARPC1A_chr7_99320898_99371262	1/1	a0001	370	311	88	40	129	12	40	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	a0002	370	3	0	0	3	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	a0003	370	1	0	0	1	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	a0004	370	1	0	0	1	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1B_chr7_99369730_99399816	1/1	a0001	372	314	71	39	144	15	43	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	a0002	372	25	15	1	7	1	1	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	a0003	372	1	0	0	1	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC2_chr2_218212189_218259348	1/1	a0001	300	331	86	70	129	12	32	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	a0002	152	1	0	0	1	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC3_chr12_110429823_110455337	1/1	a0001	178	333	88	68	124	15	36	copy fasta	ARPC3	chr12	110429823	110455337