JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIAS1_chr15_68049315_68198847	0/0	a0002	651	2	2	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS2_chr18_46798218_46922507	1/1	a0001	621	321	78	56	141	16	28	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	a0002	621	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS3_chr1_145843522_145864081	1/1	a0001	628	362	90	65	148	18	39	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	a0002	628	2	2	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	a0003	628	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	a0004	628	1	0	1	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	a0005	628	1	0	0	0	0	1	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	a0006	628	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS4_chr19_4002736_4044386	1/1	a0001	510	328	90	74	100	18	44	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	a0002	510	2	0	0	0	0	2	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	a0003	510	2	2	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	a0004	510	2	0	2	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIBF1_chr13_72777133_73021461	1/1	a0001	757	210	37	47	93	9	22	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0002	757	116	51	10	47	3	5	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0003	757	6	0	3	2	0	1	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0004	757	6	0	2	0	0	4	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0005	757	1	0	0	1	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0006	757	1	0	0	0	1	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0007	757	1	0	1	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0008	757	1	0	0	1	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0009	757	1	1	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0010	757	1	0	0	0	1	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0011	757	1	1	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	a0012	757	1	0	1	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PICALM_chr11_85952175_86074084	1/1	a0001	652	353	80	58	157	11	45	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	a0002	652	2	0	0	1	1	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	a0003	652	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	a0004	652	1	0	0	0	0	1	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	a0005	652	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICK1_chr22_38052404_38080701	1/1	a0001	415	425	100	78	183	16	46	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	a0002	415	2	0	0	2	0	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	a0003	58	1	0	0	1	0	0	copy fasta	PICK1	chr22	38052404	38080701
PID1_chr2_229018973_229276287	1/1	a0001	217	256	78	54	86	6	30	copy fasta	PID1	chr2	229018973	229276287
PIDD1_chr11_794184_810231	1/0	a0001	910	234	59	35	98	6	35	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/1	a0002	910	131	16	41	60	5	8	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0003	910	9	9	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0004	910	7	6	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0005	910	5	3	1	0	1	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0006	565	4	1	0	2	1	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0007	910	3	0	0	3	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0008	910	3	0	0	3	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0009	910	2	1	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0010	565	2	0	1	1	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0011	565	2	1	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0012	910	1	0	0	0	0	1	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0013	910	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0014	910	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0015	910	1	0	0	0	1	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	a0016	910	1	0	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231