JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIDD1_chr11_794184_810231	0/0	a0017	565	1	0	0	1	0	0	copy fasta	PIDD1	chr11	794184	810231
PIERCE1_chr9_135490181_135504869	1/1	a0001	136	414	99	77	170	18	48	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	a0002	136	3	0	0	3	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	a0003	136	1	0	0	1	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	a0004	136	1	1	0	0	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	a0005	136	1	0	0	1	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	a0006	92	1	0	1	0	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	a0007	136	1	0	0	1	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE2_chr15_55403495_55423798	1/1	a0001	121	364	49	70	186	17	40	copy fasta	PIERCE2	chr15	55403495	55423798
PIERCE2_chr15_55403495_55423798	0/0	a0002	121	52	37	6	2	1	6	copy fasta	PIERCE2	chr15	55403495	55423798
PIEZO1_chr16_88710338_88790220	0/1	a0001	2521	70	7	19	39	2	2	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0002	2521	31	3	7	15	1	5	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0003	2523	15	5	2	5	1	2	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0004	2520	11	2	4	2	0	3	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0005	2520	7	0	3	1	1	2	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0006	2521	7	0	3	2	1	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0007	2520	6	6	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0008	2520	6	5	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0009	2521	6	0	0	3	0	3	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0010	2520	5	0	2	0	2	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0011	2521	4	0	1	2	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0012	2520	4	0	2	0	1	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0013	2520	4	0	3	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0014	2521	4	3	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0015	2521	4	1	1	2	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0016	2523	3	3	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0017	2520	3	3	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0018	2523	3	3	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0019	2521	2	0	0	0	1	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0020	2521	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0021	2521	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0022	2520	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0023	2520	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0024	2521	2	0	0	2	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0025	2521	2	0	0	2	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0026	2521	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0027	2520	2	0	0	0	1	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0028	2520	2	0	0	0	1	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0029	2520	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0030	2520	2	0	0	2	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0031	2521	2	0	1	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0032	2521	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0033	2523	2	1	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0034	2521	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0035	2521	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0036	2521	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0037	2521	1	0	0	0	1	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0038	2521	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0039	2521	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0040	2521	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220