JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIEZO1_chr16_88710338_88790220	0/0	a0091	2520	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	a0092	2523	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO2_chr18_10665247_11154569	0/0	a0001	2865	37	25	8	3	0	1	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0002	2865	32	16	3	8	3	2	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0003	2865	11	0	6	2	1	2	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0004	2865	9	2	2	5	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0005	2865	9	6	2	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0006	2865	5	5	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0007	2865	5	0	1	3	0	1	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0008	2865	4	4	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0009	2865	4	4	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0010	2865	4	1	2	0	1	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0011	2865	3	3	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0012	2865	3	1	0	1	1	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0013	2865	3	0	0	3	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0014	2865	3	3	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0015	2865	3	0	0	3	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0016	2865	3	1	0	2	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0017	2865	2	1	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0018	2865	2	2	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0019	2865	2	0	0	2	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0020	2865	2	1	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0021	2865	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0022	2865	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0023	2865	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0024	2865	1	0	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0025	2865	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0026	2865	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0027	2865	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0028	2865	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0029	2865	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0030	2865	1	0	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0031	2865	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	a0032	2865	1	0	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIF1_chr15_64810632_64830647	1/0	a0001	641	231	51	42	101	8	28	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0002	641	73	19	23	14	6	11	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0003	641	7	7	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0004	641	5	5	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0005	641	4	4	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0006	641	4	0	0	1	0	3	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0007	48	3	0	0	0	3	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0008	641	3	0	0	3	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0009	641	2	1	1	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0010	641	2	0	0	0	0	2	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0011	641	2	2	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0012	641	2	2	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0013	641	2	0	0	2	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0014	641	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0015	641	1	0	0	1	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0016	641	1	0	0	0	0	1	copy fasta	PIF1	chr15	64810632	64830647