JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIF1_chr15_64810632_64830647	0/0	a0017	641	1	0	0	0	1	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0018	641	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0019	641	1	0	0	0	0	1	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	a0020	641	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/1	a0021	641	1	0	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIFO_chr1_111341622_111358013	1/0	a0001	191	411	86	56	209	13	46	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/1	a0002	191	25	10	9	0	1	4	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	a0003	191	2	1	1	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	a0004	191	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	a0005	191	1	0	0	1	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIGA_chrX_15314456_15340523	1/1	a0001	484	301	76	54	130	9	30	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	a0002	484	6	1	3	0	2	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	a0003	484	1	1	0	0	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGBOS1_chr15_55312184_55324123	1/1	a0001	54	416	92	76	182	18	46	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGB_chr15_55314222_55360648	0/0	a0001	554	159	71	16	55	4	13	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	1/1	a0002	554	110	5	26	51	9	17	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0003	554	87	3	14	58	5	7	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0004	554	5	5	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0005	554	4	4	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0006	554	4	0	0	3	0	1	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0007	554	2	2	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0008	554	2	2	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0009	537	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0010	554	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	a0011	554	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGC_chr1_172436457_172449069	1/0	a0001	297	225	86	40	74	7	17	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/1	a0002	297	161	5	38	86	11	20	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	a0003	297	1	0	0	0	0	1	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	a0004	297	1	1	0	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGF_chr2_46575937_46622041	1/1	a0001	219	360	92	74	130	16	46	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	a0002	219	2	1	1	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	a0003	219	1	1	0	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	a0004	219	1	0	1	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	a0005	219	1	1	0	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	a0006	219	1	1	0	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGG_chr4_494210_545200	1/1	a0001	983	214	44	59	69	8	32	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0002	983	67	4	6	49	2	6	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0003	983	13	12	1	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0004	983	12	1	0	7	0	4	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0005	983	11	11	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0006	983	7	1	0	5	0	1	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0007	983	6	5	1	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0008	983	4	1	1	2	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0009	983	4	4	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0010	983	4	3	1	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0011	983	3	1	0	2	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0012	983	3	0	0	3	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0013	983	3	1	1	0	0	1	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0014	983	2	2	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0015	983	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200