JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIGG_chr4_494210_545200	0/0	a0016	983	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0017	731	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0018	983	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0019	983	1	0	0	0	0	1	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0020	983	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0021	983	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0022	983	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	a0023	983	1	0	0	0	0	1	copy fasta	PIGG	chr4	494210	545200
PIGH_chr14_67584318_67605268	1/1	a0001	188	462	100	78	216	18	48	copy fasta	PIGH	chr14	67584318	67605268
PIGK_chr1_77083989_77224430	1/1	a0001	395	296	43	57	149	14	31	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	a0002	395	68	44	15	4	0	5	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	a0003	395	1	1	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	a0004	395	1	0	0	1	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGL_chr17_16212210_16331411	1/1	a0001	252	245	84	61	60	10	28	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	a0002	252	1	0	1	0	0	0	copy fasta	PIGL	chr17	16212210	16331411
PIGM_chr1_160019953_160036990	1/1	a0001	423	389	78	64	197	9	39	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	a0002	423	21	0	6	8	3	4	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	a0003	423	17	16	1	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	a0004	423	3	0	0	0	0	3	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	a0005	423	1	0	1	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	a0006	423	1	0	0	1	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGN_chr18_62036164_62192056	0/1	a0001	931	205	65	38	73	5	23	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	1/0	a0002	931	55	8	15	23	3	5	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	a0003	931	48	3	4	28	2	11	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	a0004	931	29	10	0	14	2	3	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	a0005	931	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	a0006	931	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	a0007	931	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	a0008	931	1	0	1	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	a0009	931	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGO_chr9_35083688_35101591	1/1	a0001	1089	412	91	62	197	14	46	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0002	1089	3	3	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0003	1089	2	0	0	2	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0004	1089	1	0	0	0	0	1	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0005	1089	1	0	0	0	0	1	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0006	1089	1	1	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0007	1089	1	1	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0008	1089	1	0	1	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0009	1089	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0010	1089	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0011	1089	1	0	1	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	a0012	1089	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGP_chr21_37060374_37078071	1/1	a0001	134	405	89	74	181	16	43	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	a0002	134	23	1	10	11	0	1	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	a0003	134	6	4	2	0	0	0	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	a0004	134	2	0	0	2	0	0	copy fasta	PIGP	chr21	37060374	37078071
PIGQ_chr16_564968_589109	0/0	a0001	581	173	34	25	88	3	23	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	1/1	a0002	581	167	45	41	60	10	9	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0003	581	50	12	6	12	3	17	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0004	581	4	0	0	4	0	0	copy fasta	PIGQ	chr16	564968	589109