JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIGQ_chr16_564968_589109	0/0	a0005	581	2	0	2	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0006	581	2	2	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0007	581	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0008	581	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0009	254	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0010	581	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0011	581	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0012	581	1	0	0	0	0	1	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0013	581	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0014	581	1	0	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0015	581	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	a0016	581	1	0	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGR_chr1_206923522_206951466	1/1	a0001	764	153	6	28	91	4	22	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0002	764	108	12	18	58	8	12	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0003	764	96	45	12	37	0	2	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0004	764	34	27	7	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0005	764	2	0	2	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0006	764	2	0	2	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0007	764	2	0	2	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0008	764	2	1	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0009	764	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0010	764	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	a0011	764	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGS_chr17_28548387_28576524	1/1	a0001	555	308	66	61	139	8	32	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	a0002	555	12	10	2	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	a0003	555	6	6	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	a0004	555	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	a0005	439	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	a0006	555	1	0	1	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	a0007	555	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGT_chr20_45411141_45431241	1/1	a0001	578	430	90	68	209	16	45	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0002	578	15	0	6	9	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0003	578	5	4	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0004	578	3	0	2	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0005	578	2	0	2	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0006	578	1	0	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0007	578	1	0	0	1	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0008	578	1	0	0	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0009	578	1	0	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0010	372	1	0	0	1	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0011	578	1	0	0	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	a0012	578	1	0	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGU_chr20_34555542_34682092	1/1	a0001	435	318	76	46	152	10	32	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	a0002	435	1	1	0	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	a0003	435	1	1	0	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGV_chr1_26782950_26805659	1/1	a0001	493	279	77	51	93	18	38	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	a0002	493	1	1	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	a0003	189	1	0	0	1	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	a0004	493	1	0	1	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGW_chr17_36529987_36544303	0/1	a0001	504	368	86	68	161	12	40	copy fasta	PIGW	chr17	36529987	36544303