JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIGW_chr17_36529987_36544303	0/0	a0002	504	33	0	8	21	2	2	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	a0003	231	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	a0004	504	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGX_chr3_196707377_196741007	1/1	a0001	217	396	95	70	170	16	43	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	a0002	217	13	0	2	11	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	a0003	217	2	0	0	2	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	a0004	217	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	a0005	217	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	a0006	137	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	a0007	217	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	a0008	217	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGY_chr4_88515998_88528776	1/1	a0001	71	446	94	80	210	14	46	copy fasta	PIGY	chr4	88515998	88528776
PIGZ_chr3_196941356_196973833	0/1	a0001	579	219	28	41	120	10	19	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0002	579	68	16	16	28	1	7	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	1/0	a0003	579	40	2	9	11	1	16	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0004	579	31	24	3	0	2	2	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0005	579	16	5	1	9	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0006	579	14	8	5	0	1	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0007	579	8	0	0	8	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0008	579	5	5	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0009	579	3	0	0	0	1	2	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0010	579	3	0	0	3	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0011	579	2	2	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0012	579	2	0	0	2	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0013	579	2	1	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0014	579	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0015	579	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0016	579	1	0	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0017	579	1	0	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0018	579	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0019	579	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0020	579	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0021	579	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0022	579	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0023	579	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	a0024	579	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIH1D1_chr19_49441298_49456814	0/1	a0001	290	149	32	27	58	6	25	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	1/0	a0002	290	132	6	26	78	1	20	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0003	290	48	24	18	1	4	1	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0004	290	25	23	2	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0005	290	7	6	1	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0006	290	1	1	0	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0007	290	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0008	290	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0009	290	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	a0010	290	1	0	0	0	1	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D2_chr11_112062798_112079017	1/1	a0001	315	367	94	65	168	3	35	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	a0002	315	9	1	5	0	1	2	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	a0003	315	3	0	0	0	0	3	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	a0004	315	2	0	2	0	0	0	copy fasta	PIH1D2	chr11	112062798	112079017