JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIH1D2_chr11_112062798_112079017	0/0	a0005	315	2	2	0	0	0	0	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	a0006	315	1	1	0	0	0	0	copy fasta	PIH1D2	chr11	112062798	112079017
PIK3AP1_chr10_96588315_96725514	0/1	a0001	805	95	39	13	32	0	10	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	1/0	a0002	805	83	30	17	29	0	6	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0003	805	27	0	8	13	1	5	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0004	805	20	5	11	3	1	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0005	805	13	5	4	4	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0006	805	6	0	4	2	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0007	805	4	4	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0008	805	2	0	0	2	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0009	805	2	0	0	2	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0010	805	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0011	805	1	0	0	0	0	1	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0012	805	1	0	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	a0013	805	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3C2A_chr11_17081575_17212986	1/1	a0001	1686	308	70	67	142	1	26	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0002	1686	20	7	8	1	1	3	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0003	1686	2	0	2	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0004	1686	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0005	1686	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0006	1686	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0007	1686	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0008	1686	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0009	1686	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0010	1686	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0011	1686	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0012	1686	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0013	1686	1	0	1	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0014	1686	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	a0015	1686	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2B_chr1_204417633_204499805	1/1	a0001	1634	280	75	35	129	7	32	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0002	1634	3	0	3	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0003	1634	2	2	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0004	1634	2	2	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0005	1634	2	0	0	0	0	2	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0006	1634	2	2	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0007	1634	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0008	1634	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0009	1634	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0010	1634	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0011	1634	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0012	1634	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0013	1634	1	0	0	0	1	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0014	1634	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0015	1634	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0016	1634	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	a0017	1634	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2G_chr12_18256518_18653416	1/0	a0001	1486	57	12	13	23	3	5	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0002	1486	32	13	3	7	3	6	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/1	a0003	1485	30	7	7	9	1	5	copy fasta	PIK3C2G	chr12	18256518	18653416