JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIK3C2G_chr12_18256518_18653416	0/0	a0004	1485	14	3	4	3	1	3	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0005	1486	12	12	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0006	1486	7	7	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0007	1486	5	0	3	0	2	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0008	1486	3	3	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0009	1486	3	3	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0010	1486	3	1	1	0	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0011	1485	2	2	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0012	1486	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0013	1485	1	0	0	0	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0014	1485	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0015	1486	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0016	1486	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0017	1486	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0018	1486	1	0	0	0	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	a0019	1486	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C3_chr18_41950234_42092830	1/1	a0001	887	339	81	62	152	8	34	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	a0002	887	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3CA_chr3_179143357_179245093	1/1	a0001	1068	247	65	51	85	11	33	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	a0002	1068	32	21	9	0	1	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	a0003	1068	2	0	2	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	a0004	960	1	0	0	1	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CB_chr3_138647698_138839928	1/1	a0001	1070	204	87	42	30	10	33	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	a0002	1070	1	0	0	0	0	1	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	a0003	1070	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CD_chr1_9646731_9734114	1/0	a0001	1044	290	66	64	104	13	42	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	a0002	1044	13	12	1	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	a0003	1044	8	0	1	7	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/1	a0004	1044	3	0	2	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	a0005	1044	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	a0006	1044	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	a0007	1044	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	a0008	1044	1	0	0	0	1	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CG_chr7_106860282_106913980	1/1	a0001	1102	278	71	51	119	9	26	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0002	1102	53	2	4	36	2	9	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0003	1102	27	6	9	5	1	6	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0004	1102	9	9	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0005	1102	6	6	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0006	1102	1	0	1	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0007	1102	1	0	0	0	0	1	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0008	1102	1	0	1	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0009	1102	1	0	0	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	a0010	1102	1	0	0	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3IP1_chr22_31276600_31297488	0/1	a0001	263	348	83	47	170	10	37	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	1/0	a0002	263	70	1	29	27	8	4	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	0/0	a0003	263	2	0	0	1	0	1	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	0/0	a0004	263	1	1	0	0	0	0	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	0/0	a0005	263	1	1	0	0	0	0	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3R1_chr5_68210756_68306821	1/1	a0001	724	228	44	52	86	10	34	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	a0002	724	78	46	4	19	6	3	copy fasta	PIK3R1	chr5	68210756	68306821