JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARPC3_chr12_110429823_110455337	0/0	a0002	127	1	0	0	0	1	0	copy fasta	ARPC3	chr12	110429823	110455337
ARPC4_chr3_9788082_9812101	1/1	a0001	168	446	96	68	216	18	46	copy fasta	ARPC4	chr3	9788082	9812101
ARPC5L_chr9_124857130_124882733	1/1	a0001	153	403	94	72	179	16	40	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	a0002	153	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5_chr1_183615846_183640783	1/1	a0001	151	364	98	68	148	10	38	copy fasta	ARPC5	chr1	183615846	183640783
ARPIN_chr15_89890006_89917952	1/1	a0001	226	413	96	84	171	18	42	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	a0002	226	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPP19_chr15_52542045_52574030	1/1	a0001	112	422	96	72	192	14	46	copy fasta	ARPP19	chr15	52542045	52574030
ARPP21_chr3_35634525_35799486	1/1	a0001	847	260	80	55	81	12	30	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	a0002	847	1	1	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	a0003	847	1	0	0	0	0	1	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	a0004	847	1	0	0	0	0	1	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	a0005	847	1	1	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	a0006	847	1	0	0	1	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	a0007	847	1	0	1	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARR3_chrX_70263334_70286840	1/1	a0001	388	317	74	55	139	13	34	copy fasta	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	a0002	142	1	0	0	1	0	0	copy fasta	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	a0003	85	1	0	0	1	0	0	copy fasta	ARR3	chrX	70263334	70286840
ARRB1_chr11_75255122_75356661	1/1	a0001	418	310	86	52	118	14	38	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	a0002	418	5	0	5	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	a0003	418	3	0	0	3	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	a0004	418	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	a0005	418	1	0	1	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB2_chr17_4705632_4726497	1/1	a0001	409	430	96	71	197	14	50	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	a0002	409	1	0	0	1	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	a0003	409	1	0	1	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRDC1_chr9_137600686_137620360	1/1	a0001	433	316	83	59	121	12	39	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	a0002	433	15	7	5	0	2	1	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	a0003	433	5	5	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	a0004	433	1	1	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	a0005	433	1	0	0	1	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC2_chr19_18003170_18019102	1/1	a0001	407	278	37	61	124	14	40	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0002	407	108	40	11	47	4	6	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0003	407	6	5	1	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0004	407	4	4	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0005	407	3	0	0	3	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0006	407	3	3	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0007	407	2	0	0	2	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0008	407	2	2	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0009	407	2	2	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0010	407	2	2	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0011	407	1	1	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0012	407	1	0	0	1	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0013	407	1	0	0	1	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	a0014	407	1	0	1	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC3_chr5_91363631_91388317	1/1	a0001	414	400	85	66	189	16	42	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	a0002	414	1	0	0	1	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	a0003	414	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC4_chr15_97955703_97978833	0/1	a0001	418	157	2	29	100	4	21	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0002	418	142	46	21	60	4	11	copy fasta	ARRDC4	chr15	97955703	97978833