JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIK3R1_chr5_68210756_68306821	0/0	a0003	724	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	a0004	160	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R2_chr19_18148163_18175532	0/1	a0001	728	294	93	51	104	9	36	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0002	728	14	0	4	8	0	2	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0003	728	7	0	4	0	2	1	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	1/0	a0004	728	6	2	1	1	0	1	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0005	728	3	0	2	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0006	728	3	0	0	3	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0007	728	2	0	0	2	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0008	728	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0009	728	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0010	728	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0011	728	1	0	0	0	1	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	a0012	728	1	1	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R3_chr1_46035140_46137629	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/1	a0001	461	202	61	41	71	8	20	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	1/0	a0002	461	111	27	23	46	2	12	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	a0003	461	2	0	0	1	0	1	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	a0004	461	1	0	0	0	0	1	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	a0005	461	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R4_chr3_130673934_130751829	1/1	a0001	1358	290	76	45	135	6	26	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	a0002	1358	5	0	5	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	a0003	1358	2	2	0	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	a0004	1358	2	0	0	2	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	a0005	1358	2	0	0	2	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	a0006	1358	1	1	0	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	a0007	1358	1	1	0	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	a0008	1358	1	0	0	1	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R5_chr17_8873916_8970707	1/1	a0001	880	287	81	48	105	12	39	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0002	880	3	3	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0003	880	2	2	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0004	880	1	1	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0005	880	1	0	1	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0006	880	1	0	0	0	0	1	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0007	880	1	1	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0008	880	1	0	1	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	a0009	880	1	0	0	1	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R6_chr17_8797722_8872674	1/1	a0001	754	324	76	68	123	12	43	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0002	754	7	0	0	7	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0003	754	5	5	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0004	754	3	3	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0005	754	2	0	0	2	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0006	754	2	0	0	0	2	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0007	754	2	0	0	2	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0008	754	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0009	754	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0010	754	1	0	0	0	0	1	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0011	565	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0012	754	1	1	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0013	754	1	1	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674