JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIK3R6_chr17_8797722_8872674	0/0	a0014	754	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0015	754	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	a0016	754	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIKFYVE_chr2_208261255_208363746	0/1	a0001	2098	215	60	38	76	9	31	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0002	2098	28	8	13	4	2	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0003	2098	22	9	2	8	0	3	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0004	2098	8	6	1	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0005	2098	3	0	0	3	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	1/0	a0006	2098	3	2	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0007	2098	2	2	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0008	2098	2	0	0	0	1	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0009	2098	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0010	2098	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0011	2098	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0012	2098	1	0	0	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	a0013	2098	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PILRA_chr7_100368487_100405096	0/1	a0001	303	207	74	23	66	12	31	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	1/0	a0002	303	147	8	35	86	4	13	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	a0003	303	5	5	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	a0004	303	3	3	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	a0005	303	2	2	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRB_chr7_100353117_100372831	1/1	a0001	227	347	81	58	154	12	40	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	a0002	226	29	9	4	6	4	6	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	a0003	226	2	2	0	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	a0004	226	1	0	1	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	a0005	227	1	0	1	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	a0006	227	1	0	0	1	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	a0007	227	1	0	0	1	0	0	copy fasta	PILRB	chr7	100353117	100372831
PIM1_chr6_37165152_37180428	1/1	a0001	313	407	89	70	184	14	48	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	a0002	313	5	5	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	a0003	313	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	a0004	313	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM2_chrX_48908182_48924024	1/1	a0001	311	276	75	50	119	7	23	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	a0002	61	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	a0003	311	1	0	0	0	0	1	copy fasta	PIM2	chrX	48908182	48924024
PIM3_chr22_49955772_49969072	0/1	a0001	326	307	71	59	131	13	32	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	1/0	a0002	326	112	21	19	50	5	16	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	a0003	326	2	2	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	a0004	326	2	2	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	a0005	326	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	a0006	326	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	a0007	326	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIMREG_chr17_6439455_6456469	1/1	a0001	238	310	79	64	113	18	34	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	a0002	238	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	a0003	238	1	0	0	1	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIN1_chr19_9830318_9854689	1/1	a0001	163	421	98	70	187	16	48	copy fasta	PIN1	chr19	9830318	9854689
PIN1_chr19_9830318_9854689	0/0	a0002	158	1	0	0	1	0	0	copy fasta	PIN1	chr19	9830318	9854689
PIN4_chrX_72176757_72203340	1/1	a0001	131	296	70	49	142	5	28	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	a0002	131	8	6	2	0	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	a0003	21	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340