JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIN4_chrX_72176757_72203340	0/0	a0004	37	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	a0005	131	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340
PINK1_chr1_20628458_20656511	1/1	a0001	581	303	60	62	142	8	29	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0002	581	72	0	4	54	3	11	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0003	581	51	20	8	15	5	3	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0004	581	9	9	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0005	581	6	5	1	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0006	581	3	0	2	0	1	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0007	581	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0008	581	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0009	581	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0010	581	1	0	0	0	1	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0011	581	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0012	581	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0013	581	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0014	581	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0015	581	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0016	581	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0017	581	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0018	581	1	0	1	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0019	581	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	a0020	581	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINLYP_chr19_43570801_43587098	1/1	a0001	204	448	94	80	210	18	44	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	a0002	204	2	2	0	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINX1_chr8_10759961_10844875	0/0	a0001	328	268	52	55	114	12	35	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0002	328	61	39	5	10	3	4	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0003	328	7	0	0	7	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0004	328	4	0	2	0	1	1	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0005	327	3	3	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0006	328	1	0	0	1	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0007	328	1	0	0	1	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0008	328	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0009	328	1	0	1	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0010	328	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0011	328	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0012	328	1	0	0	1	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0013	328	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	a0014	328	1	0	1	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PIP4K2A_chr10_22529854_22719578	1/0	a0001	406	154	80	37	15	3	18	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/1	a0002	406	47	8	10	15	5	8	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	a0003	406	5	4	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2B_chr17_38760691_38804556	0/1	a0001	416	379	92	60	176	10	40	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2C_chr12_57586192_57608418	1/1	a0001	421	358	92	68	146	16	34	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	a0002	421	27	4	0	22	0	1	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	a0003	421	1	0	0	0	0	1	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4P1_chr14_20452681_20466434	1/1	a0001	277	466	92	82	228	18	44	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	a0002	277	1	0	0	1	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	a0003	277	1	0	0	1	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P2_chr8_90988802_91045859	1/1	a0001	257	342	90	58	150	12	30	copy fasta	PIP4P2	chr8	90988802	91045859
PIP5K1A_chr1_151193552_151254531	1/1	a0001	562	331	85	62	130	16	36	copy fasta	PIP5K1A	chr1	151193552	151254531