JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIP5K1A_chr1_151193552_151254531	0/0	a0002	562	3	3	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1B_chr9_68700240_69014176	1/0	a0001	540	214	80	26	75	10	22	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/1	a0002	540	3	0	2	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	a0003	540	2	0	0	2	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	a0004	540	1	0	0	1	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1C_chr19_3625183_3705468	1/1	a0001	668	319	81	60	119	18	39	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0002	668	2	2	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0003	668	2	2	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0004	663	1	0	0	0	0	1	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0005	668	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0006	668	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0007	668	1	0	0	0	0	1	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0008	668	1	0	0	0	0	1	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0009	668	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0010	668	1	0	1	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0011	668	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	a0012	668	1	0	1	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5KL1_chr9_127915881_127935777	1/1	a0001	394	397	89	63	187	10	46	copy fasta	PIP5KL1	chr9	127915881	127935777
PIP5KL1_chr9_127915881_127935777	0/0	a0002	394	1	0	1	0	0	0	copy fasta	PIP5KL1	chr9	127915881	127935777
PIP5KL1_chr9_127915881_127935777	0/0	a0003	394	1	1	0	0	0	0	copy fasta	PIP5KL1	chr9	127915881	127935777
PIP5KL1_chr9_127915881_127935777	0/0	a0004	394	1	0	0	1	0	0	copy fasta	PIP5KL1	chr9	127915881	127935777
PIPOX_chr17_29038141_29062216	1/1	a0001	390	378	82	75	159	14	46	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0002	390	4	0	0	4	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0003	390	4	0	4	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0004	390	3	3	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0005	390	2	1	1	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0006	390	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0007	390	1	0	0	0	0	1	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0008	390	1	0	0	1	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0009	390	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	a0010	390	1	0	0	0	0	1	copy fasta	PIPOX	chr17	29038141	29062216
PIP_chr7_143127077_143144739	1/1	a0001	146	332	94	70	108	11	47	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	a0002	146	4	0	2	0	1	1	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	a0003	146	3	3	0	0	0	0	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	a0004	146	1	1	0	0	0	0	copy fasta	PIP	chr7	143127077	143144739
PIRT_chr17_10817470_10843087	1/1	a0001	137	451	100	87	198	17	47	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	a0002	137	2	0	1	0	1	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	a0003	137	1	0	0	0	0	1	copy fasta	PIRT	chr17	10817470	10843087
PIR_chrX_15379799_15498333	1/1	a0001	290	263	62	50	115	9	25	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	a0002	290	3	2	1	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	a0003	290	2	2	0	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	a0004	42	1	0	0	1	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	a0005	290	1	0	0	0	0	1	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	a0006	290	1	0	1	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	a0007	290	1	0	1	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PISD_chr22_31613491_31667215	1/1	a0001	409	317	81	63	126	13	32	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	a0002	409	6	0	5	0	1	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	a0003	409	3	3	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	a0004	409	2	2	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PITHD1_chr1_23773418_23793232	1/1	a0001	211	372	84	80	162	18	26	copy fasta	PITHD1	chr1	23773418	23793232