JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PITPNA_chr17_1512718_1567792	1/1	a0001	270	368	90	58	164	12	42	copy fasta	PITPNA	chr17	1512718	1567792
PITPNB_chr22_27846669_27924256	1/1	a0001	271	366	86	54	174	16	34	copy fasta	PITPNB	chr22	27846669	27924256
PITPNC1_chr17_67372281_67702256	1/1	a0001	332	218	74	46	54	14	28	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNM1_chr11_67486768_67510363	1/1	a0001	1244	282	83	55	99	12	31	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0002	1244	4	0	0	3	0	1	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0003	1244	2	0	1	0	1	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0004	1244	1	0	1	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0005	1244	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0006	1244	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0007	1244	1	0	0	0	0	1	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0008	1244	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0009	1244	1	0	0	0	0	1	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0010	1244	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0011	1244	1	1	0	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0012	1244	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0013	1244	1	0	0	0	1	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0014	1244	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	a0015	1244	1	0	1	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM2_chr12_122978480_123156090	1/1	a0001	1349	205	53	40	76	6	28	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0002	1346	18	18	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0003	1349	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0004	1349	1	0	0	1	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0005	1349	1	0	0	1	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0006	1349	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0007	1349	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0008	1349	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	a0009	1349	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM3_chr17_6446263_6561555	1/1	a0001	974	162	48	33	52	6	21	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	a0002	974	38	14	3	15	3	3	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	a0003	974	10	1	5	0	2	2	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	a0004	974	3	2	0	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	a0005	974	2	0	2	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	a0006	974	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	a0007	974	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	a0008	974	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITRM1_chr10_3132728_3177782	0/0	a0001	96	249	38	37	135	12	27	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	1/0	a0002	1037	109	21	26	44	4	13	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/1	a0003	96	25	13	9	0	1	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0004	1037	21	1	1	19	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0005	1037	17	6	1	9	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0006	96	5	4	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0007	1037	4	1	1	0	1	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0008	1037	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0009	96	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0010	1037	2	0	2	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0011	1037	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0012	1037	2	1	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0013	1037	1	0	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0014	96	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0015	1037	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782