JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PIWIL3_chr22_24714034_24779720	0/0	a0022	873	1	0	1	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0023	873	1	0	1	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0024	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0025	873	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0026	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0027	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL4_chr11_94562368_94626421	1/1	a0001	852	260	50	48	119	9	32	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0002	852	64	6	14	31	5	8	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0003	852	32	29	0	0	0	3	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0004	852	9	1	0	5	0	3	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0005	852	5	4	1	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0006	852	3	2	1	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0007	852	2	2	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0008	852	2	0	0	0	2	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0009	852	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0010	852	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0011	852	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0012	852	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0013	852	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0014	852	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	a0015	852	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PJA1_chrX_69155861_69170453	1/0	a0001	588	310	73	52	145	6	33	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/1	a0002	588	17	0	8	0	7	1	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	a0003	588	4	4	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	a0004	588	1	0	0	1	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	a0005	588	1	1	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	a0006	588	1	0	0	1	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA2_chr5_109329722_109414974	1/0	a0001	708	140	66	18	49	2	4	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	a0002	708	110	13	14	67	3	13	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/1	a0003	708	88	5	33	17	9	23	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	a0004	708	7	6	1	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	a0005	708	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJVK_chr2_178446378_178467102	1/1	a0001	352	353	82	62	159	13	35	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	a0002	352	39	4	1	32	0	2	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	a0003	352	8	4	2	0	0	2	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	a0004	352	7	0	5	0	1	1	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	a0005	352	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PKD1L1_chr7_47769614_47953466	0/0	a0001	2849	34	15	3	12	1	3	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0002	2849	31	6	5	19	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0003	2849	22	1	3	13	1	4	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0004	2849	18	0	7	8	0	3	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0005	2849	15	0	3	10	0	2	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	1/0	a0006	2849	10	0	4	1	2	2	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0007	2849	9	0	2	5	0	2	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0008	2849	8	0	1	6	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0009	2849	8	3	2	2	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0010	2849	7	5	2	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0011	2849	7	0	0	5	0	2	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0012	2849	7	0	1	6	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0013	2849	6	0	3	1	0	2	copy fasta	PKD1L1	chr7	47769614	47953466