JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKD1L1_chr7_47769614_47953466	0/0	a0014	2849	6	0	1	2	0	3	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0015	2849	5	4	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0016	2849	4	4	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0017	2849	4	3	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0018	2849	4	0	1	2	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0019	2849	4	0	2	0	2	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0020	2849	4	4	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0021	2849	3	3	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/1	a0022	2849	3	0	1	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0023	2849	3	3	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0024	2849	3	0	0	3	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0025	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0026	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0027	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0028	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0029	2849	2	0	0	1	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0030	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0031	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0032	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0033	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0034	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0035	2849	2	0	0	1	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0036	2849	2	0	2	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0037	2849	2	0	0	1	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0038	2849	2	0	0	0	0	2	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0039	2849	2	2	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0040	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0041	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0042	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0043	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0044	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0045	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0046	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0047	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0048	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0049	2849	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0050	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0051	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0052	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0053	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0054	2849	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0055	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0056	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0057	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0058	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0059	2849	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0060	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0061	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0062	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0063	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466