JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKD1L1_chr7_47769614_47953466	0/0	a0064	2849	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0065	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0066	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0067	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0068	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0069	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0070	2849	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0071	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0072	2849	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0073	2849	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0074	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0075	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0076	2849	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0077	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0078	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0079	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0080	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0081	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0082	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0083	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0084	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0085	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0086	2849	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0087	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0088	2849	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0089	2849	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	a0090	2849	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L3_chr16_71924538_72005402	0/0	a0001	788	56	1	10	36	3	6	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0002	1732	35	2	2	18	4	9	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0003	1256	29	11	12	3	1	2	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0004	788	26	15	2	6	0	3	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0005	1732	25	1	9	15	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0006	1256	12	11	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0007	1732	11	11	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0008	1732	11	1	0	3	3	4	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/1	a0009	1732	9	2	4	0	0	2	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0010	1732	7	0	3	4	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0011	1256	7	7	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0012	1732	7	1	1	1	4	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0013	1256	6	3	2	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0014	85	5	5	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0015	1732	5	0	0	5	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0016	245	4	0	0	3	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0017	788	4	0	0	2	0	2	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0018	1732	3	0	0	3	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0019	1732	2	0	0	2	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0020	1732	2	1	0	0	1	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0021	1732	2	2	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0022	1732	2	0	0	2	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0023	1256	2	0	1	0	1	0	copy fasta	PKD1L3	chr16	71924538	72005402