JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKD1L3_chr16_71924538_72005402	0/0	a0024	1732	2	0	2	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0025	9	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0026	1732	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0027	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0028	1732	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0029	1585	1	0	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0030	1732	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0031	1732	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0032	1256	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0033	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0034	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0035	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0036	1732	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0037	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0038	1256	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0039	1732	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0040	1732	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0041	1732	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0042	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0043	1732	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0044	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0045	1256	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0046	788	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0047	1256	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0048	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	1/0	a0049	1732	1	0	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0050	1732	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0051	1732	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0052	1732	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0053	1732	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0054	1732	1	0	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0055	1256	1	0	0	0	1	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0056	1732	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0057	1732	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	a0058	1256	1	0	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1_chr16_2083708_2140898	0/0	a0001	4303	87	9	23	33	7	15	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0002	3177	11	0	6	4	0	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0003	2820	8	1	5	0	0	2	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0004	4303	8	0	0	4	0	4	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0005	4303	7	7	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0006	4303	7	5	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0007	4303	4	3	0	0	1	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0008	4303	4	4	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0009	4303	3	2	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0010	4303	3	3	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0011	4303	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0012	4303	2	0	0	0	1	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0013	4303	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0014	4303	2	0	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0015	4303	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898