JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARRDC4_chr15_97955703_97978833	1/0	a0003	418	90	40	19	18	7	5	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0004	418	10	0	0	10	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0005	418	7	6	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0006	418	2	0	0	2	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0007	418	2	0	2	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0008	418	2	0	0	2	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0009	418	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0010	418	1	0	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0011	418	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0012	418	1	0	0	0	0	1	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0013	418	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0014	418	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0015	418	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0016	418	1	0	0	0	1	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0017	418	1	0	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	a0018	418	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC5_chr19_4885437_4907896	1/1	a0001	328	397	84	82	171	16	42	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	a0002	328	6	6	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	a0003	328	4	0	2	0	0	2	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	a0004	328	2	2	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	a0005	328	1	0	0	1	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	a0006	328	1	0	0	1	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	a0007	328	1	0	0	1	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARSA_chr22_50617754_50633152	1/1	a0001	509	201	42	25	104	6	22	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0002	509	144	28	31	64	8	13	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0003	509	93	22	21	40	2	8	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0004	509	6	6	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0005	509	5	0	4	0	1	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0006	509	2	0	0	2	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0007	509	2	0	0	1	1	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0008	509	1	0	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0009	509	1	0	0	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0010	509	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0011	509	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0012	509	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0013	509	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	a0014	509	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSB_chr5_78772209_78990310	1/0	a0001	533	222	78	29	89	6	19	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/1	a0002	533	100	5	19	60	7	8	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	a0003	533	29	4	12	2	2	9	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	a0004	533	6	0	3	0	1	2	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	a0005	533	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	a0006	533	1	0	0	1	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	a0007	533	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSD_chrX_2898972_2934339	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/1	a0001	593	128	38	34	40	6	9	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	1/0	a0002	593	119	22	17	51	6	22	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	a0003	593	67	12	5	48	1	1	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	a0004	593	19	5	1	13	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	a0005	593	4	2	2	0	0	0	copy fasta	ARSD	chrX	2898972	2934339